Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I13
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    27   2.6  

>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +3

Query: 522 RNIEGMRLSTQTAPTFSIFSPPYRRDLHQVHI*DVFALCLYQQGFFLIVHPTSAVPPTQL 701
           RN+     +  +AP+FS  S     DL       V+A CL ++    IV P   +P  +L
Sbjct: 15  RNLLLNASTVSSAPSFSFVSGNESADLDSCASSIVYAYCLQRKQLGRIVVPFFNIPRKEL 74

Query: 702 K-RDTYIHQ*KLYSSFQNDISFVLSVI 779
           + R    +   L S   +DI F+  ++
Sbjct: 75  RLRPELSYLLNLASISSDDIVFLDDIV 101


>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 522 RNIEGMRLSTQTAPTFSIFSPPYRRDL 602
           RN++ +RL  + APT  +++ P RR +
Sbjct: 6   RNLKSVRLPFRRAPTLPLYNVPVRRSI 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,388,627
Number of Sequences: 5004
Number of extensions: 69505
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)