Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_I12
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 63 4e-11
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 30 0.34
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 29 1.0
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 2.4
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po... 27 3.2
SPBC216.06c |swi1||replication fork protection complex subunit S... 27 4.2
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 27 4.2
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 26 5.5
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 26 7.3
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 9.7
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 63.3 bits (147), Expect = 4e-11
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = -3
Query: 311 NFIGVVCARSLHYQFYSWYFHSLPYILWSNNFSTIFRFLLLALVEMCWNTYPSTIFSSVT 132
N IG++CARSLHYQFY+W+ PY+ + +F L L E WN +PST SS+
Sbjct: 327 NLIGILCARSLHYQFYAWFAWYSPYLCYQASFPAPIVIGLWMLQEYAWNVFPSTKLSSL- 385
Query: 131 LHIC 120
+ +C
Sbjct: 386 IAVC 389
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -3
Query: 782 SYIKGSXDIGRVFNHTWTVNYRFLDSEIFEN 690
SY + D GR F++ WTVN+RF+ IFE+
Sbjct: 234 SYWTQAFDFGRAFDYKWTVNWRFIPRSIFES 264
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 30.3 bits (65), Expect = 0.34
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 485 KEVITKEQEEFLTSFEAMLKKSSRKSVKQPVSKPTETSD 369
KE KE E TS EA+ +K ++K P+ + +T+D
Sbjct: 21 KEKKNKESNESSTSVEALNEKEMINTIKSPIIETADTAD 59
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 395 VSKPTETSDYSIDFDILTQLFILPMFIVNFIGVVCARSLHYQFYSWYFHSLPYIL 231
+ P +SD +I +T LF++ F FIGVV + Y+ W +S ++
Sbjct: 1167 IPPPANSSDTNITNSDVTALFLISCFQYIFIGVVLSIGPPYREKVWRNYSFTAVV 1221
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 27.5 bits (58), Expect = 2.4
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 467 EQEEFLTS--FEAMLKKSSRKSVKQPVSKPTETSDYSIDFDILTQLFILPMFIVNFIGVV 294
E+EE L S EAML SS V PT T + S++ ++ + LP ++ I
Sbjct: 74 EEEEMLNSDASEAMLTVSS-------VPSPTLTENESVNESVVPNILKLPDEVLLVILEN 126
Query: 293 CARSLH 276
C R LH
Sbjct: 127 CIRDLH 132
>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 64 TVFSSFDIFL*TPYNIATWQMCSVTLENIVLGYV 165
TVF+ FDI T Y+I T C+ E ++G +
Sbjct: 117 TVFAHFDIVPYTTYSILTKYRCAQDKEREIVGLI 150
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 449 TSFEAMLKKSSRKSVKQPVSKPTETSDYSIDFD 351
T E +L + R +V+ P S ETSD I+F+
Sbjct: 832 TKPEDLLVRKQRGNVRLPSSSEGETSDEEIEFE 864
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 458 EFLTSFEAMLKKSSRKSVKQPVSKPTETSDYSIDFDILTQLFI 330
+F+ SF+ +LK S K K+P TE S F ++T F+
Sbjct: 368 DFILSFDEVLKLSEGKQSKEPSEVLTEES-AEPHFSLITGKFV 409
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 206 FRFLLLALV-EMCWNTYPSTIFSSVTL 129
FRF L + WN +PS IF +++L
Sbjct: 262 FRFFLYVFIASFIWNWFPSYIFQALSL 288
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 488 EKEV--ITKEQEEFLTSFEAMLKKSSRKSVKQPVSKPTETSDYSIDF 354
+KEV +TK+ E TS + +S QP+S+ + Y++ F
Sbjct: 39 DKEVDGVTKDLSELSTSDPIFERSASGVLTSQPMSRDIKIDSYTLSF 85
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 256 IFTVCHIFFGPIIFQLFSDSYY-WL 185
+F C FFG I+F +F+ + WL
Sbjct: 117 VFQFCAFFFGGIVFYIFNHFLHKWL 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,097
Number of Sequences: 5004
Number of extensions: 57604
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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