Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I12
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0507 - 3704314-3704449,3705038-3705094,3705219-3705297,370...    76   4e-14
03_04_0179 + 18161696-18163361,18163552-18163664                       32   0.47 

>01_01_0507 -
           3704314-3704449,3705038-3705094,3705219-3705297,
           3705380-3705486,3705833-3705949,3706077-3706165,
           3706668-3706721,3706800-3706866,3706971-3707128,
           3707318-3707386,3707481-3707618,3707706-3707740,
           3707829-3707952
          Length = 409

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 29/41 (70%), Positives = 34/41 (82%)
 Frame = -3

Query: 323 MFIVNFIGVVCARSLHYQFYSWYFHSLPYILWSNNFSTIFR 201
           MF+ NFIG+VCARSLHYQFYSWYF+SLP++LW   F T  R
Sbjct: 325 MFVGNFIGIVCARSLHYQFYSWYFYSLPFLLWKTRFPTFVR 365



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 19/39 (48%), Positives = 30/39 (76%)
 Frame = -3

Query: 812 GLPFLISNPVSYIKGSXDIGRVFNHTWTVNYRFLDSEIF 696
           G+PFL+S+PV YI  + ++GRVF H W+VN++F+  + F
Sbjct: 219 GMPFLLSHPVEYISRAFNLGRVFIHFWSVNFKFVPEKFF 257


>03_04_0179 + 18161696-18163361,18163552-18163664
          Length = 592

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = -3

Query: 248 SLPYILWSNNFSTIFRFLLLALVEMCWNTYPSTIFSSVTLHICHVAILYGVY 93
           SLPY++ + ++    R++LLA++ +     P T+   + +  C V IL+ VY
Sbjct: 542 SLPYVVLAQSYGA--RYMLLAVLNLYHKKSPITMRHQLVIISCSVIILHEVY 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,099,431
Number of Sequences: 37544
Number of extensions: 277649
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)