Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_I12
(814 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical pr... 84 1e-16
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 33 0.32
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 31 0.74
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 31 0.74
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 31 0.74
U97012-6|AAK39147.1| 337|Caenorhabditis elegans Serpentine rece... 31 0.98
Z81593-5|CAB04743.1| 332|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z92829-9|CAB07349.1| 360|Caenorhabditis elegans Hypothetical pr... 28 6.9
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 28 9.1
AF016414-6|AAG24022.1| 323|Caenorhabditis elegans Serpentine re... 28 9.1
>Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical
protein K09E4.2 protein.
Length = 640
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 11/81 (13%)
Frame = -3
Query: 311 NFIGVVCARSLHYQFYSWYFHSLPYILWSN-----NFSTI------FRFLLLALVEMCWN 165
N IG+ +RSLHYQFYSWYFH +P++L+ + + STI ++ LLA VE+ WN
Sbjct: 330 NLIGIAFSRSLHYQFYSWYFHQIPFLLFCDYPHVASVSTIPWRQFLWKVPLLAAVELSWN 389
Query: 164 TYPSTIFSSVTLHICHVAILY 102
YPST +SS LH+CHV I +
Sbjct: 390 VYPSTWWSSALLHVCHVIIFW 410
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = -3
Query: 812 GLPFLISNPVSYIKGSXDIGRVFNHTWTVNYRFLDSEI 699
G PFL+ + SY++ S D+GRVF WTVN+RFL E+
Sbjct: 225 GGPFLLYDWKSYLQQSFDLGRVFMFKWTVNWRFLPEEV 262
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -3
Query: 317 IVNFIGVVCARSLHYQFYSWYFHSLPYILWSNNFSTIFRFLLLALVEMCWNTYPSTIFS 141
I V+C +S+ Y +++YFH ++L + S +F ++L + W PST S
Sbjct: 76 ICTIFAVIC-QSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFLKWRNQPSTPIS 133
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 317 IVNFIGVVCARSLHYQFYSWYFHSLPYILWSNNFSTIFRFLLLALVEMCWNTYPSTIFS 141
I V+C +S+ Y +++YFH ++L + S +F ++L W PST S
Sbjct: 76 ICTIFAVIC-QSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFSKWRNQPSTPIS 133
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 317 IVNFIGVVCARSLHYQFYSWYFHSLPYILWSNNFSTIFRFLLLALVEMCWNTYPSTIFS 141
I V+C +S+ Y +++YFH ++L + S +F ++L W PST S
Sbjct: 76 ICTIFAVIC-QSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFSKWRNQPSTPIS 133
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 317 IVNFIGVVCARSLHYQFYSWYFHSLPYILWSNNFSTIFRFLLLALVEMCWNTYPSTIFS 141
I V+C +S+ Y +++YFH ++L + S +F ++L W PST S
Sbjct: 76 ICTIFAVIC-QSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFSKWRNQPSTPIS 133
>U97012-6|AAK39147.1| 337|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 15 protein.
Length = 337
Score = 31.1 bits (67), Expect = 0.98
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -3
Query: 344 TQLFILPMFIVNFIGVVCARSLHYQFYSWYFHSLPYILWSNNFSTIFRFLLLALVEM 174
T +IL F F CA L S Y H+L + LWS S +FR+L+L V +
Sbjct: 77 TITYILNGFCTYFGLSTCAIGL-----SMYIHTLTHSLWSLFISFVFRYLILYKVSL 128
>Z81593-5|CAB04743.1| 332|Caenorhabditis elegans Hypothetical
protein T20B3.5 protein.
Length = 332
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = -3
Query: 440 EAMLKKSSRKSVKQPVSKPTETSDYSIDFDILTQLFILPMFIVNFIGVVCARSLHYQFYS 261
+ +LKK K++ Q + + +L FI+ +++IGV C H QF
Sbjct: 217 DRLLKKQMTKTMSQKTFDLHKKFQRAFILQLLIP-FIIVFLPISYIGVTCISEYHNQF-- 273
Query: 260 WYFHSLPYILWSNN--FSTIFRFLLLA 186
F++L I+ S++ FSTI L A
Sbjct: 274 --FNNLTLIIISSHGFFSTIAMIALHA 298
>Z92829-9|CAB07349.1| 360|Caenorhabditis elegans Hypothetical
protein F10A3.13 protein.
Length = 360
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 223 IIFQLFSDSYYWL*LKCVGIHIQVQYSQVLHYTFAMWLYCMVF 95
++F FSD++Y + + + IH +Y V+ F M+++ M F
Sbjct: 92 LLFLSFSDAFYRMIITLLAIHFLYRYLSVVR-PFNMFIFSMKF 133
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 203 RFLLLALVEMCWNTYPSTIFSSVTL---HICHVAILYGVYKKMSNELKTVAKL 54
RF L A+ ++ PS++F TL H+C + L VYK S K V L
Sbjct: 8 RFFLFAISQLAC---PSSLFVVHTLDASHLCQIVRLPAVYKAASQGRKQVGNL 57
>AF016414-6|AAG24022.1| 323|Caenorhabditis elegans Serpentine
receptor, class h protein211 protein.
Length = 323
Score = 27.9 bits (59), Expect = 9.1
Identities = 26/103 (25%), Positives = 53/103 (51%)
Frame = -3
Query: 446 SFEAMLKKSSRKSVKQPVSKPTETSDYSIDFDILTQLFILPMFIVNFIGVVCARSLHYQF 267
+F++++K++ + +V +S+ T I+TQ I+P I+ C SL ++
Sbjct: 214 TFQSLIKQT-KNAV---LSRNTLALQRKFFISIITQT-IIPFAIIILPISYCGYSLSQEY 268
Query: 266 YSWYFHSLPYILWSNNFSTIFRFLLLALVEMCWNTYPSTIFSS 138
Y+ F+++ +I+ S++ I +L + E Y T+FSS
Sbjct: 269 YNQTFNNIAFIIISSH-GLISTIAILLIHE----PYRKTLFSS 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,856,027
Number of Sequences: 27780
Number of extensions: 312663
Number of successful extensions: 1005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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