Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I12
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 374 SDYSIDFDILTQLFILPMFIVNFIGVVCARSLH 276
           S Y I  D   +L+IL   I+N    +C+  LH
Sbjct: 127 SAYKIAIDKFDRLWILDSGIINNTQPMCSPKLH 159


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 374 SDYSIDFDILTQLFILPMFIVNFIGVVCARSLH 276
           S + I  D   +L++L   +VN    VCA  LH
Sbjct: 124 SAFKIAIDKFDRLWVLDSGLVNRTVPVCAPKLH 156


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 709 IVKYLKIIFFIC-LCY*YMFYYWLCLYL 629
           I KY +I+F +C +C+  M  YW+ +YL
Sbjct: 404 IDKYSRIVFPVCFVCFNLM--YWI-IYL 428


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 709 IVKYLKIIFFIC-LCY*YMFYYWLCLYL 629
           I KY +I+F +C +C+  M  YW+ +YL
Sbjct: 404 IDKYSRIVFPVCFVCFNLM--YWI-IYL 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,975
Number of Sequences: 438
Number of extensions: 4042
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)