Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I07
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    28   8.0  
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    28   8.0  

>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 6   FISFKFHNLSNXSPQSVSSATLKGXNSSXNLITSLTHRTPK 128
           F  F F N  + SP +     LK  + + N  +  TH  PK
Sbjct: 865 FFKFLFKNNFSQSPYNKIKVLLKSADDTSNFDSEFTHEVPK 905


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -3

Query: 687 FYTLPR--IFFNEFYDSIIASVRLFCFNVNGLPT--ISNVLRYELYD 559
           F+T+ +  IFF+    SI+ S++LF +N NG  +  IS   R  L D
Sbjct: 172 FWTIHKSIIFFSILVFSILISIKLFIWNTNGQSSNQISKANRLALLD 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,494,614
Number of Sequences: 27780
Number of extensions: 360444
Number of successful extensions: 740
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)