Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_I06
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0269 + 16265191-16265472,16265574-16266149 31 0.28
09_02_0338 + 7426999-7428322,7428390-7428646 28 2.6
05_03_0618 - 16262826-16263097,16263111-16263183 27 3.5
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 27 3.5
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32... 27 6.1
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 27 6.1
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318... 27 6.1
10_01_0036 + 427678-428029,431043-431968 26 8.1
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 26 8.1
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 31.1 bits (67), Expect = 0.28
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 127 LPLFPLS*NRAWEPL---MESTDPQCHILQHRRPRLPL 231
LP P W PL M T P C +L++ RPRLPL
Sbjct: 139 LPFAPSLVRGRWVPLVGEMARTGPLCLLLENPRPRLPL 176
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +1
Query: 169 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 309
LM C L HR P L + L A L+AI KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 284 RIARREQKLKEHGASSCISGKRGRRC 207
R+ARR + LK + C G R RRC
Sbjct: 11 RMARRRRWLKRRRSGHCRCGLRSRRC 36
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -2
Query: 200 IWHWGSVDSISGSHARFQLSGN---SGRKHS 117
++ WGS+D+ H+RF S N +GR H+
Sbjct: 410 VYRWGSLDANHVGHSRFDSSENHMVTGRHHN 440
>05_01_0046 +
320600-320631,320694-320733,320871-320957,321282-321378,
321532-321823,321850-321990,322285-322390
Length = 264
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -2
Query: 278 ARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSHARFQLSGNSGRKHSR 114
A++ + E S G G + W+W D SGS + FQ S SR
Sbjct: 87 AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 278 ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 165
A RE + ++G A + G R N W G DS+SG
Sbjct: 44 ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82
>02_05_0567 +
30029862-30030136,30030299-30030384,30031663-30031811,
30032581-30032685,30032779-30032895,30033251-30033394,
30033519-30033668
Length = 341
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 26 SWRGGSHGSSSQL 64
SWRGGS GSSS L
Sbjct: 176 SWRGGSQGSSSGL 188
>10_01_0036 + 427678-428029,431043-431968
Length = 425
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 44 HGSSSQLCHNAAGH*ISVVC 103
H S+ +LC GH + VVC
Sbjct: 298 HASAGELCGGTLGHTVEVVC 317
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 26.2 bits (55), Expect = 8.1
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -2
Query: 188 GSVDSISGSHARFQLSGNSGRKHSRCCTSI-LRKFSGRQHCGTV 60
GS DS+ G R + N K C T I LRK SG V
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSGNNDLSDV 711
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,592,371
Number of Sequences: 37544
Number of extensions: 178768
Number of successful extensions: 446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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