Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_I06
(369 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 34 0.028
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 34 0.028
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.15
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 29 1.0
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 28 1.8
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical pr... 26 7.3
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 26 7.3
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 34.3 bits (75), Expect = 0.028
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -2
Query: 254 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFS 84
EH SC+SG G +C C + D ISG H Q G G+K +R C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPC---LKGYF 1249
Query: 83 GRQHCGTVDCCCHGS 39
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
Score = 25.8 bits (54), Expect = 9.7
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = -2
Query: 257 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFSGR 78
KE+G CI G G C + +G + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 77 QHC 69
+HC
Sbjct: 1195 EHC 1197
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 34.3 bits (75), Expect = 0.028
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -2
Query: 254 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFS 84
EH SC+SG G +C C + D ISG H Q G G+K +R C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPC---LKGYF 1249
Query: 83 GRQHCGTVDCCCHGS 39
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
Score = 25.8 bits (54), Expect = 9.7
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = -2
Query: 257 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFSGR 78
KE+G CI G G C + +G + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 77 QHC 69
+HC
Sbjct: 1195 EHC 1197
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 239 SCISGKRGRRC--CNIWHWGSVDSISGSHARFQLSGN 135
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 1.0
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 44 HGSSSQLCHNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 193
H +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 897 HIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = -2
Query: 188 GSVDSISGSHARFQLSGNSGRKHSR--CCTSILRKFSGRQHCGTVDCCCHGSPH 33
G V + H F +G +H + C T +RK +HC C + H
Sbjct: 23 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 76
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = -2
Query: 188 GSVDSISGSHARFQLSGNSGRKHSR--CCTSILRKFSGRQHCGTVDCCCHGSPH 33
G V + H F +G +H + C T +RK +HC C + H
Sbjct: 131 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 184
>Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical
protein F44D12.2 protein.
Length = 342
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 190 QCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRR 288
+CH+ + PRLP ++ + C FC + A R
Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 26.2 bits (55), Expect = 7.3
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +1
Query: 169 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 258
L+E DP C ++ +++P++ +E +F
Sbjct: 68 LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,745,843
Number of Sequences: 27780
Number of extensions: 141781
Number of successful extensions: 324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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