Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I05
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    32   0.098
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   6.4  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 31.9 bits (69), Expect = 0.098
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
 Frame = -2

Query: 606  LVADDLDKLKIGLYGDDGSTNKPHHIHLLESGSSDPSDSIFGVALMA-AIGTALTMAIXG 430
            ++AD L+  K+G    DG+ ++      LE+  +DP  ++  ++L A  +G  LT A   
Sbjct: 996  IIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDVNVLIISLKAGGVGLNLTCANHV 1055

Query: 429  FAFG-WYTLSKRAKA 388
            F    W++ S  A+A
Sbjct: 1056 FIMDPWWSWSVEAQA 1070


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 493 LYFWCCSDGGHRNSPHHGHXRICFW 419
           L  +CCS GG    P       CFW
Sbjct: 656 LELFCCSHGGLTPDPTKDSIECCFW 680


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 94  LLLCIRFKVYT*LAYYYTYGSKPGAFINGVISFF 195
           LL+CI F + +   +YY Y   P  F+  + S F
Sbjct: 495 LLICIFFYIQSSPPFYYGYALFPTIFLQLIHSIF 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,219
Number of Sequences: 5004
Number of extensions: 59402
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)