Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I01
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    27   1.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    24   5.6  
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   7.5  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    23   9.8  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    23   9.8  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    23   9.8  

>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 194  VIKDVTKYFINYIHISNLGLLFN 126
            +I  V ++F+NYI   +LGL+ N
Sbjct: 940  LIDSVKEFFVNYIKYDSLGLISN 962


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 301 CFK*TSTFKLFKIINLSQQFVVNLISLSIQSHEE 200
           CF     FK  K++NLS  ++  + S   Q+  +
Sbjct: 822 CFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSD 855


>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 274 LFKIINLSQQFVVNLISLSIQSHEEC 197
           LFKI + S+ F+++   +SI   EEC
Sbjct: 11  LFKIDSYSKTFLLSCYCVSIYRLEEC 36


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 270 NSLNVEVYLKHSCR*NLSAGRIH 338
           N L    YL+ +CR N S G  H
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFH 73


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 270 NSLNVEVYLKHSCR*NLSAGRIH 338
           N L    YL+ +CR N S G  H
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFH 73


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 270 NSLNVEVYLKHSCR*NLSAGRIH 338
           N L    YL+ +CR N S G  H
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFH 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,346
Number of Sequences: 5004
Number of extensions: 19384
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)