Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H19
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...   214   1e-56
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    93   3e-20
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   7.3  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   9.6  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   9.6  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  214 bits (522), Expect = 1e-56
 Identities = 100/163 (61%), Positives = 129/163 (79%), Gaps = 4/163 (2%)
 Frame = -1

Query: 810 EXMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADS 631
           + MSYR++++V+PLIW+E     H+ SR+E+M+KAK+QFK+R  ANNV+IIIPVP DADS
Sbjct: 263 DLMSYRMSSNVRPLIWVECESIVHSGSRIEFMVKAKAQFKKRCIANNVQIIIPVPEDADS 322

Query: 630 PKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVECE--EVDGKPPIQVKF 457
           P+F+T+ G V+Y PEQ A+ W+IK F GGKE+ MRA  GLPSV+ E  +V  K P+Q+KF
Sbjct: 323 PRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKF 382

Query: 456 EIPYFTTSGIQVRYLKIIE-KSGYQALPWVRYITQNG-DYQLR 334
            IPYFTTSGIQVRYLKI E K  Y A+PWVRY+TQNG +Y +R
Sbjct: 383 AIPYFTTSGIQVRYLKITEPKLNYHAMPWVRYVTQNGTEYSIR 425


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 48/161 (29%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
 Frame = -1

Query: 810 EXMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADS 631
           E MSYR + ++     I  ++E+ +  ++ Y I  ++ +  +  ++++   IPVP +   
Sbjct: 286 ELMSYRSHENINIPFRIVPIVEQLSKQKIIYRISIRADYPHK-LSSSLNFRIPVPTNVVK 344

Query: 630 PKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFEI 451
              +   G   Y P +N I W I  F G  E +  A   L +   +++  KPPI + F I
Sbjct: 345 ANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNTTNQQIWAKPPISLDFNI 404

Query: 450 PYFTTSGIQVRYLKIIEKSG--YQALPWVRYITQNGDYQLR 334
             FT+SG+ V+YL++ E S   Y+++ WVRY T+ G  ++R
Sbjct: 405 LMFTSSGLHVQYLRVSEPSNSKYKSIKWVRYSTRAGTCEIR 445


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 755 LLLSVMLIQELNT**KLNLSLRDDQLLIMLKSLYQFL 645
           +LLS   IQ+LNT   LNLS      +  LK + Q L
Sbjct: 867 VLLSSSFIQQLNTVENLNLSFNSTDAVYHLKKILQDL 903


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 632 HQNSRQQLVALNIHQNKMRSHGQSNHFQEA 543
           +Q + QQL  L+I++ K RSH  S+  +E+
Sbjct: 62  YQRTLQQLNTLSIYELKNRSHFSSSPVEES 91


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 569 HVIAFCSGVYLTLPIVVLNFGE----SASAGTGIMISTLLAVDRLLN 697
           H++  C  +Y  L IVV  FG     S   G G+     +A+ R++N
Sbjct: 184 HLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGV-FGNYVALQRMMN 229


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 465 LELGAFHQLPHIQQKADQSE 524
           L +  FH++PHIQQ   QS+
Sbjct: 108 LNMYGFHKVPHIQQGVLQSD 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,817
Number of Sequences: 5004
Number of extensions: 60681
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)