Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_H19
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 237 1e-62
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 228 3e-60
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 125 5e-29
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 50 2e-06
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 32 0.62
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 31 1.1
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 31 1.1
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 31 1.4
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 30 2.5
01_07_0202 + 41964448-41965104 28 7.6
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 237 bits (579), Expect = 1e-62
Identities = 105/161 (65%), Positives = 132/161 (81%), Gaps = 2/161 (1%)
Frame = -1
Query: 810 EXMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADS 631
+ M+YRL+T VKPLIW+E+ IE+H+ SR+E M+KA+SQFK RSTA NVEI +PVP+DA +
Sbjct: 267 DLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPSDATN 326
Query: 630 PKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVECEEV--DGKPPIQVKF 457
P +T++GS Y PE++A+ W +KSFPGGK+Y+ RA F LPS+ EE + K PI+VKF
Sbjct: 327 PNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEEAAPEKKAPIRVKF 386
Query: 456 EIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 334
EIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT G+Y+LR
Sbjct: 387 EIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 427
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 228 bits (558), Expect = 3e-60
Identities = 101/161 (62%), Positives = 129/161 (80%), Gaps = 2/161 (1%)
Frame = -1
Query: 810 EXMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADS 631
+ M+YRL+T VKPLIW+E+ +E+H+ SR++ +K +SQFK RSTA NVEI +PVP D+ +
Sbjct: 242 DLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITVKTRSQFKERSTATNVEIEVPVPEDSTN 301
Query: 630 PKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVECEE--VDGKPPIQVKF 457
P +T++GS Y PE++A+ W IKSFPGGKEY+ RA F LPS+ E+ + K PI+VKF
Sbjct: 302 PNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKAPIRVKF 361
Query: 456 EIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 334
EIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT G+Y+LR
Sbjct: 362 EIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 402
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 125 bits (301), Expect = 5e-29
Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 1/160 (0%)
Frame = -1
Query: 810 EXMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADS 631
E M YR+ V + I+ +R+E +K KS F + A V + +PVP
Sbjct: 278 ELMKYRITEGVNLPFRVLPTIKELGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAK 337
Query: 630 PKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVECEEVD-GKPPIQVKFE 454
F+TT G KY +++ W I+ FPG E M A L S E+ +PPIQ++F+
Sbjct: 338 TSFQTTSGKAKYNASIDSLVWKIRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQ 397
Query: 453 IPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 334
+P FT SG++VR+LK+ EKSGY + WVRYIT+ G Y++R
Sbjct: 398 VPMFTASGLRVRFLKVWEKSGYNTVEWVRYITRAGSYEIR 437
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -1
Query: 474 PIQVKFEIPYFTTSGIQVRYLKIIEKS-GYQALPWVRYITQNGDYQLR 334
P+ + F IP + TS +QVRYL+I +KS Y WVRY+TQ Y R
Sbjct: 371 PVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVAR 418
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 31.9 bits (69), Expect = 0.62
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 675 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 562
+NV I IP+PA ++P + G KY + + WSI
Sbjct: 702 HNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSI 739
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -1
Query: 756 SVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNA 577
S++ + +EY +A F S V I IP+PA ++P+ + G KY +
Sbjct: 547 SILGNETYVNIEY--EASEMFDLHS----VIISIPLPALREAPRVRQIDGEWKYDSRNSV 600
Query: 576 ITWSI 562
+ WSI
Sbjct: 601 LEWSI 605
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 31.1 bits (67), Expect = 1.1
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 1/136 (0%)
Frame = -1
Query: 810 EXMSYRLNTHVKPLIWIESVIERHA-HSRVEYMIKAKSQFKRRSTANNVEIIIPVPADAD 634
E MSYR+ I+++ + + + RV M+ K+ + T +++ + +P
Sbjct: 266 ELMSYRVKKLKTTPIYVKPQLTSDSGNCRVNVMVGIKNDPGK--TIDSITVQFRLPPLIA 323
Query: 633 SPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFE 454
S G+V +Q W+I P K + + L + P +VKF+
Sbjct: 324 SADLTANYGTVDILADQTCF-WTIGQIPKDKAPSLSGNLRLEE-GLTHLHTFPTFEVKFK 381
Query: 453 IPYFTTSGIQVRYLKI 406
I SG+Q+ L++
Sbjct: 382 IMGVALSGLQIDKLEV 397
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 675 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 562
+NV I IP+PA ++P + G +Y + + WSI
Sbjct: 528 HNVVISIPLPALREAPSVRQIDGEWRYDSRNSVLEWSI 565
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 675 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 562
+NV I IP+PA ++P + G +Y + + WSI
Sbjct: 442 HNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSI 479
>01_07_0202 + 41964448-41965104
Length = 218
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 566 DHVIAFCSGVYLTLPIVVLNFGESASAG 649
DHV+ Y+ LPI V++ GE AG
Sbjct: 51 DHVVCAADSFYVGLPIPVVSAGEELMAG 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,792,156
Number of Sequences: 37544
Number of extensions: 337570
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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