Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H17
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.27 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   5.9  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   7.8  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   7.8  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.8  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   7.8  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   7.8  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = -1

Query: 476  AIDYSTYFKVDVLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGDCSNIVTEDIIKYR 300
            A++YS + ++      +   D +D+++ + E+L+S       KN + SN++   IIKYR
Sbjct: 1240 AVNYSLHSQLCEKFNVQESLDSIDDLIEKFEKLSS-----SEKNDNLSNLIERQIIKYR 1293


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 21/109 (19%), Positives = 51/109 (46%)
 Frame = -1

Query: 443  VLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGDCSNIVTEDIIKYRREINVLGKRIST 264
            ++EG   +  + D  ++   E+ S   +   K+  CSN+   +    +R   V  + +++
Sbjct: 729  IVEGISFLLFLNDTGVSDFHEIVSSTSIDIQKS--CSNMTFGEFFTSKRGREVTKELVNS 786

Query: 263  LSNVLMFLSNNVDTVEKQVERAEGFFGVQNDNKLKSLLKPFIKRGRETI 117
            L N  +    N+D V + + +  G F   +D  +   ++  +K+ ++T+
Sbjct: 787  LVNRHLQSGGNIDMVSQLLRKKCGSFCSADDVLIFKAVES-LKKAKDTV 834


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 188 FGVQNDNKLKSLLKPFIKRGRETIPDNSLPPHHKIDLSSVMDNFQS 51
           F   ND      LK  ++  R T+P+ S P  H  DL  ++++ +S
Sbjct: 224 FPQMNDWDKVVALKTLVRYARLTLPEPSTPSTHS-DLKELLESIKS 268


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 351 KERRLLQYCD*RYNKIS*RDKCAREKDFDP 262
           + +R +QYC  RYN++  RD   +  D DP
Sbjct: 173 QNQRQIQYCIQRYNELV-RDLIGKACDLDP 201


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
 Frame = -1

Query: 506 WRRLN-MLEDIAIDYSTYFKVDVLEGFKTVQDVVDN--MLTRLEELTSVL----QMVKLK 348
           W  ++ +L D +++     + D    +KT    + N   L R    +S++    ++  L+
Sbjct: 165 WNNVDTLLRDGSLENVNNSRQDQFLPYKTFSSTISNSDFLHRESSFSSLIDEESKLASLR 224

Query: 347 NGDCSNIVTEDIIKYRREINVLGKRISTLSNVLMFLSNNVDTVEKQVERAEGFFGVQNDN 168
           N + ++     ++K   E N+L +++  LSN   F  NNV         +  F  +Q+D+
Sbjct: 225 NLNINDRPPLPVLK-NSERNLLHRQL--LSNHPFFSQNNVSLSTNSKNYSTDFTKIQSDS 281

Query: 167 KL 162
            L
Sbjct: 282 SL 283


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 679 FVGSKKKLLYYILIVPIMEL-FIKVYNSTCPTPLRDLTKIVNTWIDKFVS 533
           ++ S  + L+ I    I EL     YNS C TP  DL   +    D  VS
Sbjct: 310 YLASTMQSLFSIKEFAIHELNLFNTYNSVCQTPTTDLQCQLGKLADGLVS 359


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 475 AISSNMFNRLQNLDTNIQISLQ 540
           ++SSN++  L NLD N  +S Q
Sbjct: 197 SVSSNVYQHLLNLDMNFHLSKQ 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,410,129
Number of Sequences: 5004
Number of extensions: 73393
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)