Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H14
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...   103   4e-23
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.2  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.2  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   3.2  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   4.3  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   7.5  

>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score =  103 bits (246), Expect = 4e-23
 Identities = 60/174 (34%), Positives = 102/174 (58%), Gaps = 5/174 (2%)
 Frame = -3

Query: 650 PDMVFPKNRLTLAHKSGASINFNPLDALKRVASTVEPV-EVSCSEVWMQAR--PYAE-KL 483
           P+M F  N +++ +K+   + F   DALK V +  E V +VS ++ W ++R  P  E  +
Sbjct: 39  PEMTFGNNYISIEYKNQPVVGFFTEDALKMVGTKPEDVMQVSFAKDWAKSRIKPGEEYPV 98

Query: 482 KKSFDWTFCTDYKGSIS-DNITVWETEESIDFELLKQKNQILFYHDLTLFEDELHDHGVS 306
              FDWT+ TDY+G+I   N    E ++ I  + +    Q L+++++ LFEDEL D+G S
Sbjct: 99  IYPFDWTYYTDYQGTIQRPNAKFIEIDQVIPVQKILNAGQNLWFNEIILFEDELADNGKS 158

Query: 305 KLSVKIRVMPSYWFVLLRYFLRVDDVLVRSNETRMFHMLNTDYILREYTSKESS 144
              V+ RV+  +  +L R  +R+D V VR NETR++  L  D++L++   K+++
Sbjct: 159 MFDVRARVVQGHLILLARLVVRLDKVNVRLNETRIYIDLLNDFLLKDCRKKQAT 212


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/84 (21%), Positives = 42/84 (50%)
 Frame = -3

Query: 332 DELHDHGVSKLSVKIRVMPSYWFVLLRYFLRVDDVLVRSNETRMFHMLNTDYILREYTSK 153
           DEL + G+ K  + +  +P Y  ++ +   R+  ++++S + R+   L     L E++ +
Sbjct: 710 DELSNSGIQKFGMNLDFLPLYVVIITK---RI-AIMLQSGDMRVKKFLELIRELVEFSKE 765

Query: 152 ESSAKDLNMPTSHMKEADDVIPFL 81
           E+ A   +   + +    ++ PFL
Sbjct: 766 ETMATSQSPIRTLLSACINLRPFL 789


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -3

Query: 491 EKLKKSFDWTFCTDYKGSISDNITVWETEESIDFELLKQKNQILFYH 351
           E LKK F        KG +   +TV    E +DF L  +K  I FYH
Sbjct: 117 EMLKKEFARVEAAKEKGHMQF-LTVENEREVMDFTLSSKKVVIHFYH 162


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = -3

Query: 758 SRILPSMCATKVVCERDDDQFCQFCTYSKELKIPHFPDM-VFPKNRLTLAHKSGASINFN 582
           S I+PS+  +K++ + DDD   +   ++++  I  FPD+   PK   +    + +SI  +
Sbjct: 158 SNIVPSINESKILEQEDDDVSNKSLPHAQQSIIRSFPDIQKQPKGFFSYPSSTVSSIAPS 217

Query: 581 PLDA 570
            L+A
Sbjct: 218 TLEA 221


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 647 DMVFPKNRLTLAHKS-GASINFNPLDALKRVASTVEPVEVSCSEVWMQARPYAEKLKKSF 471
           DM+   N   L H +    I FN   AL+ +  +   +      +    RPY E  K   
Sbjct: 486 DMIEKSNFKRLEHVTVRVCIPFNRRGALEILLESPSGIR----SILASERPYDENSKGFL 541

Query: 470 DWTFCT 453
           DWTF T
Sbjct: 542 DWTFMT 547


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 147 ERKGFEYAHVPHEGSR*RHSIFTCXRRKLHISFILI 40
           E +GF   HV H  +  R  + TC   K H   I I
Sbjct: 53  ENRGFRTCHVCHRKNNMRLKVGTCESCKKHTCAICI 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,265
Number of Sequences: 5004
Number of extensions: 68613
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)