Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H13
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   6.0  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   6.0  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    26   7.9  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    26   7.9  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   7.9  

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 191 LTTEIPSYKNYYIILIQSTNLKIKS 265
           ++T +   K +Y  + QSTNLK+KS
Sbjct: 829 ISTSLEPLKYFYDAIEQSTNLKLKS 853


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 9   QKFHTPFDYNVCNIKITISHDDISHYQYRHEVL--YHYKT 122
           +KFH   ++  C++  T+   + S+Y+Y  +V   YHY T
Sbjct: 197 KKFH--IEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYST 234


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 167 SQSKGSSPLTTEIPSYKNYYIILIQSTNLKIKSTISL 277
           S+++ SSP    IPS  + Y+I +  + L ++ T S+
Sbjct: 16  SENEASSPFKESIPSRSSLYLIALTVSLLGVQLTWSV 52


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 467 HSPVTSSPAFSDSPLYTSPDIRLMYCFTN**GDY*LSMGRSLSSSK 604
           H+   + P  SD PLY+SP+  L    T   G    S+G + S SK
Sbjct: 643 HTIPINKPFTSDRPLYSSPNDTLERVETGNQGQRMNSIGNASSFSK 688


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 483  LLLHFLIPLYIRLPTYV*CTALPINKAT 566
            +L H+L  +Y++  TYV  ++LP++ +T
Sbjct: 1175 ILKHYLSMIYLQFRTYVSFSSLPLHIST 1202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,897
Number of Sequences: 5004
Number of extensions: 61152
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)