Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H13
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81492-7|CAB04032.1|  384|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical p...    28   9.9  
Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical p...    28   9.9  
AL132862-21|CAB70232.1|  476|Caenorhabditis elegans Hypothetical...    28   9.9  

>Z81492-7|CAB04032.1|  384|Caenorhabditis elegans Hypothetical
           protein E03H4.11 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -2

Query: 710 RTETIHIVIQVTGLNIRTEMVPEVEDVPAINCVRQSWTRTGFSP*T 573
           R+  +  +++V  L  R     E  ++P  NC R  W +   +P T
Sbjct: 37  RSPKLPKIVRVASLRNRNSSFHESSEIPKENCTRSGWLKDSTAPET 82


>AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical
           protein Y67A10A.6 protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -3

Query: 424 QCIAKKNFQQI*ICAK*CFVLNEHLNKCLVDRCCN*MPKHVVPSVTRR 281
           +C+A +N+  + +    CF +N + NK L  +     P H +  ++ +
Sbjct: 398 KCLADRNYAHLQLKKSFCFSINLYSNKYLTAQFSTIKPSHAISRISHQ 445


>Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical
           protein C14A4.12b protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%)
 Frame = +1

Query: 16  SIPHLIIMFVI*KLQ*VMMTFHIINIGMRYYTIIKLEPVLYFKFYYFITSIPIKRIITSH 195
           S+PH+ ++  I       +TF +         +  L  +++  F  F   I +  I  + 
Sbjct: 329 SVPHIFVLLAI------FLTFVLSRRDATRVNMSHLNKLIFVGFSAFFLIISLSLINVNL 382

Query: 196 HGNS*L*KLLYYIDSVHEFENKVHDFTGRGALLTARHA-SAFNYNICPLGICLNVHSVQN 372
           +      K  Y I   H  E K+   T   AL T     S FN+    + + L + S+  
Sbjct: 383 YAL--FTKQFYKI--FHTSEQKLPFLTAFLALFTGLSVLSKFNFITIAISLVLGIFSINA 438

Query: 373 II*HIFKFV 399
              HIF F+
Sbjct: 439 TYLHIFSFI 447


>Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical
           protein C14A4.12a protein.
          Length = 717

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%)
 Frame = +1

Query: 16  SIPHLIIMFVI*KLQ*VMMTFHIINIGMRYYTIIKLEPVLYFKFYYFITSIPIKRIITSH 195
           S+PH+ ++  I       +TF +         +  L  +++  F  F   I +  I  + 
Sbjct: 349 SVPHIFVLLAI------FLTFVLSRRDATRVNMSHLNKLIFVGFSAFFLIISLSLINVNL 402

Query: 196 HGNS*L*KLLYYIDSVHEFENKVHDFTGRGALLTARHA-SAFNYNICPLGICLNVHSVQN 372
           +      K  Y I   H  E K+   T   AL T     S FN+    + + L + S+  
Sbjct: 403 YAL--FTKQFYKI--FHTSEQKLPFLTAFLALFTGLSVLSKFNFITIAISLVLGIFSINA 458

Query: 373 II*HIFKFV 399
              HIF F+
Sbjct: 459 TYLHIFSFI 467


>AL132862-21|CAB70232.1|  476|Caenorhabditis elegans Hypothetical
           protein Y73F8A.26 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 51  KITISHD--DISHYQYRHEVLYHYKTRACALF*VLLFHNINPNQKD 182
           K+++ HD  +   YQY H   YH    A A+     F   NP+ KD
Sbjct: 111 KMSVYHDLEERKPYQYMHICYYHQGELAMAVQSAYTFLVANPDDKD 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,394,704
Number of Sequences: 27780
Number of extensions: 348067
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)