Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H12
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    77   1e-15
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    62   4e-11
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    62   4e-11
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    62   4e-11
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    62   4e-11
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    62   4e-11
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    32   0.031
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    29   0.29 
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    27   0.87 

>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 37/63 (58%), Positives = 44/63 (69%)
 Frame = -2

Query: 256 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 77
           MLIKVKTLTGKEIE+DI+P D            EGIPP QQRLI++GKQM D+K A+ Y 
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60

Query: 76  VTG 68
           + G
Sbjct: 61  LEG 63


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 256 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 77
           M I VKTLTGK I +++E +D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 76  V 74
           +
Sbjct: 61  I 61


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 256 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 77
           M I VKTLTGK I +++E +D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 76  V 74
           +
Sbjct: 61  I 61


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 256 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 77
           M I VKTLTGK I +++E +D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 76  V 74
           +
Sbjct: 61  I 61


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 256 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 77
           M I VKTLTGK I +++E +D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 76  V 74
           +
Sbjct: 61  I 61



 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 256 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 77
           M I VKTLTGK I +++E +D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 76  V 74
           +
Sbjct: 137 I 137



 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 256 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 77
           M I VKTLTGK I +++E +D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 76  V 74
           +
Sbjct: 213 I 213



 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 256 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 77
           M I VKTLTGK I +++E +D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 76  V 74
           +
Sbjct: 289 I 289



 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 256 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 77
           M I VKTLTGK I +++E +D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 76  V 74
           +
Sbjct: 365 I 365


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 61.7 bits (143), Expect = 4e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 256 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 77
           M I VKTLTGK I +++E +D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 76  V 74
           +
Sbjct: 61  I 61


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 32.3 bits (70), Expect = 0.031
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 229 GKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDE 98
           GK+ +++IEP +              +PP++Q++I  G Q+ D+
Sbjct: 10  GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDD 53


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -2

Query: 151 IPPQQQRLIFSGKQMNDEKTAQDYKV 74
           I  ++QRLI++G+ + DE++ + YK+
Sbjct: 39  IEKERQRLIYAGRVLKDEESLKTYKI 64


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 142 QQQRLIFSGKQMNDEKTAQDYKV 74
           ++Q+LI+SG+ + D+KT  +Y +
Sbjct: 40  ERQKLIYSGRILADDKTVGEYNI 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,754
Number of Sequences: 5004
Number of extensions: 20757
Number of successful extensions: 50
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)