Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H11
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    36   0.006
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    29   0.72 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    28   2.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   2.2  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   3.9  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   6.7  

>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -3

Query: 878 EPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 762
           EP +T+ D   ++   KPT+N  D+ K  +F +DFG EG
Sbjct: 394 EPKLTVRDFYSAVRKVKPTLNAGDIEKHTQFTKDFGAEG 432


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 908 GSMCLVTKLGE-PPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 762
           G   L TK+    P+ + D   S+ V +P+VN   + +  ++ ++FG +G
Sbjct: 691 GESLLFTKMESIRPINLDDFKTSIKVIRPSVNLQGLERYSEWDKEFGSQG 740


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 772 PKSSMNFLNFTISSSFTVGFETAKDLNMSDIVTGGSPSLVTRHIDPGHFYS 924
           P+S  +F++   SSS   GFE   DL+ S  VT    S+++ + +   FYS
Sbjct: 250 PRSEESFVSMDSSSSIVEGFE--NDLSPSQ-VTLNESSIISSNREEESFYS 297


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 346  HWLLK*CLLHNIERIFEV*SLW 281
            HW+L+ CL+H I++I+    LW
Sbjct: 2059 HWILRACLVHGIQQIWSA-ILW 2079


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 370 QVFIIYLQIYKYLQFNIDKQLTIL*SFLNFYIYNINNAKILFYYF 504
           Q  ++ L +  Y+QFN+  Q   L S  +F     NN  I + Y+
Sbjct: 209 QAMVLTLLLRNYIQFNLYDQADRLVSKTSFLTNASNNLAIRYQYY 253


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 829 FETAKDLNMSDIVTGGSPS 885
           FE +KDLN ++ +TG SP+
Sbjct: 440 FEDSKDLNDTNSITGSSPT 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,798
Number of Sequences: 5004
Number of extensions: 64119
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)