Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H11
         (949 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323...    39   0.007
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221...    38   0.009
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222...    33   0.25 

>02_01_0450 +
           3234378-3234834,3235118-3235223,3235722-3235920,
           3236119-3236187,3236299-3236373,3236484-3236582,
           3236694-3236864,3237394-3237519
          Length = 433

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -3

Query: 896 LVTKLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 762
           L  ++  PP+T +D+ + LA  K TV++ D+    +F  +FG+EG
Sbjct: 389 LAAQITPPPITRTDLDKVLARQKATVSEKDLEVYTRFTREFGEEG 433


>01_01_0268 -
           2214923-2215048,2215131-2215286,2215371-2215469,
           2215557-2215631,2215732-2215800,2216515-2216713,
           2220162-2220267,2221117-2221588
          Length = 433

 Score = 38.3 bits (85), Expect = 0.009
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -3

Query: 896 LVTKLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 762
           L  K+  PP++ +D  + LA  +PTV+  D+    +F ++FG+EG
Sbjct: 389 LAAKILPPPISRTDFEKVLARQRPTVSKKDLEVHERFTKEFGEEG 433


>01_01_0270 -
           2225250-2225263,2225549-2225732,2225817-2225972,
           2226276-2226374,2226489-2226563,2226682-2226750,
           2226917-2227115,2227492-2227597,2228118-2228526
          Length = 436

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 896 LVTKLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
           L  K+  PP++  D    L   +PTV+  D+V   KF ++F +E
Sbjct: 368 LAAKILLPPISKIDFDEVLVRQRPTVSKKDLVVYEKFTQEFSEE 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,768,098
Number of Sequences: 37544
Number of extensions: 325170
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)