Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_H11
(949 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC039574-1|AAH39574.1| 444|Homo sapiens vacuolar protein sortin... 66 2e-10
AY232629-1|AAP59551.1| 444|Homo sapiens cell migration-inducing... 66 2e-10
AF282904-1|AAG01471.1| 444|Homo sapiens vacuolar protein sortin... 66 2e-10
AF195514-1|AAG33022.1| 444|Homo sapiens VPS4-2 ATPase protein. 66 2e-10
BC047932-1|AAH47932.1| 437|Homo sapiens vacuolar protein sortin... 64 9e-10
BC035121-1|AAH35121.1| 70|Homo sapiens VPS4A protein protein. 64 9e-10
AL133634-1|CAB63758.1| 266|Homo sapiens hypothetical protein pr... 64 9e-10
AK000200-1|BAA91005.1| 240|Homo sapiens protein ( Homo sapiens ... 64 9e-10
AF282903-1|AAG01470.1| 437|Homo sapiens vacuolar protein sortin... 64 9e-10
AF255952-1|AAK52408.1| 437|Homo sapiens vacuolar protein sortin... 64 9e-10
AF159063-1|AAD49227.1| 437|Homo sapiens SKD1-homolog protein. 64 9e-10
AF155740-1|AAD42971.1| 432|Homo sapiens vacuolar sorting protei... 64 9e-10
AF132747-1|AAL75948.1| 437|Homo sapiens SKD2 protein protein. 64 9e-10
AF112215-1|AAF17203.1| 437|Homo sapiens SKD1 protein protein. 64 9e-10
>BC039574-1|AAH39574.1| 444|Homo sapiens vacuolar protein sorting 4
homolog B (S. cerevisiae) protein.
Length = 444
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/42 (71%), Positives = 37/42 (88%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 762
KL EP V+MSDMLRSL+ +KPTVN+ D++KL+KF EDFGQEG
Sbjct: 403 KLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
Score = 33.1 bits (72), Expect = 1.5
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGAIEMTW+DVP D+
Sbjct: 389 PGAIEMTWMDVPGDK 403
>AY232629-1|AAP59551.1| 444|Homo sapiens cell migration-inducing 1
protein.
Length = 444
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/42 (71%), Positives = 37/42 (88%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 762
KL EP V+MSDMLRSL+ +KPTVN+ D++KL+KF EDFGQEG
Sbjct: 403 KLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
Score = 33.1 bits (72), Expect = 1.5
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGAIEMTW+DVP D+
Sbjct: 389 PGAIEMTWMDVPGDK 403
>AF282904-1|AAG01471.1| 444|Homo sapiens vacuolar protein sorting
factor 4B protein.
Length = 444
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/42 (71%), Positives = 37/42 (88%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 762
KL EP V+MSDMLRSL+ +KPTVN+ D++KL+KF EDFGQEG
Sbjct: 403 KLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
Score = 33.1 bits (72), Expect = 1.5
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGAIEMTW+DVP D+
Sbjct: 389 PGAIEMTWMDVPGDK 403
>AF195514-1|AAG33022.1| 444|Homo sapiens VPS4-2 ATPase protein.
Length = 444
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/42 (71%), Positives = 37/42 (88%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 762
KL EP V+MSDMLRSL+ +KPTVN+ D++KL+KF EDFGQEG
Sbjct: 403 KLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
Score = 33.1 bits (72), Expect = 1.5
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGAIEMTW+DVP D+
Sbjct: 389 PGAIEMTWMDVPGDK 403
>BC047932-1|AAH47932.1| 437|Homo sapiens vacuolar protein sorting 4
homolog A (S. cerevisiae) protein.
Length = 437
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
KL EP V MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 396 KLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
Score = 31.9 bits (69), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGA+EMTW+DVP D+
Sbjct: 382 PGAMEMTWMDVPGDK 396
>BC035121-1|AAH35121.1| 70|Homo sapiens VPS4A protein protein.
Length = 70
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
KL EP V MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 29 KLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 69
Score = 32.7 bits (71), Expect = 2.0
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGA+EMTW+DVP D+
Sbjct: 15 PGAVEMTWMDVPGDK 29
>AL133634-1|CAB63758.1| 266|Homo sapiens hypothetical protein
protein.
Length = 266
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
KL EP V MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 225 KLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 265
Score = 31.9 bits (69), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGA+EMTW+DVP D+
Sbjct: 211 PGAMEMTWMDVPGDK 225
>AK000200-1|BAA91005.1| 240|Homo sapiens protein ( Homo sapiens
cDNA FLJ20193 fis, clone COLF0795. ).
Length = 240
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
KL EP V MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 199 KLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 239
Score = 31.9 bits (69), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGA+EMTW+DVP D+
Sbjct: 185 PGAMEMTWMDVPGDK 199
>AF282903-1|AAG01470.1| 437|Homo sapiens vacuolar protein sorting
factor 4A protein.
Length = 437
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
KL EP V MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 396 KLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
Score = 31.9 bits (69), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGA+EMTW+DVP D+
Sbjct: 382 PGAMEMTWMDVPGDK 396
>AF255952-1|AAK52408.1| 437|Homo sapiens vacuolar protein sorting
VPS4-1 protein.
Length = 437
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
KL EP V MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 396 KLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
Score = 31.9 bits (69), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGA+EMTW+DVP D+
Sbjct: 382 PGAMEMTWMDVPGDK 396
>AF159063-1|AAD49227.1| 437|Homo sapiens SKD1-homolog protein.
Length = 437
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
KL EP V MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 396 KLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
Score = 31.9 bits (69), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGA+EMTW+DVP D+
Sbjct: 382 PGAMEMTWMDVPGDK 396
>AF155740-1|AAD42971.1| 432|Homo sapiens vacuolar sorting protein 4
protein.
Length = 432
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
KL EP V MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 391 KLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 431
Score = 31.9 bits (69), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGA+EMTW+DVP D+
Sbjct: 377 PGAMEMTWMDVPGDK 391
>AF132747-1|AAL75948.1| 437|Homo sapiens SKD2 protein protein.
Length = 437
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
KL EP V MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 396 KLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
Score = 31.9 bits (69), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGA+EMTW+DVP D+
Sbjct: 382 PGAMEMTWMDVPGDK 396
>AF112215-1|AAF17203.1| 437|Homo sapiens SKD1 protein protein.
Length = 437
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 765
KL EP V MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 396 KLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
Score = 31.9 bits (69), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 930 PGAIEMTWIDVPSDQ 886
PGA+EMTW+DVP D+
Sbjct: 382 PGAMEMTWMDVPGDK 396
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,555,366
Number of Sequences: 237096
Number of extensions: 2057882
Number of successful extensions: 10249
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10244
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12492094950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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