Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H11
         (949 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to ye...    53   3e-07
Z72518-2|CAA96700.1|  613|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    28   8.5  

>AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 4 protein.
          Length = 430

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = -3

Query: 887 KLGEPPVTMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 762
           KL  PP++M D+ RSLA  KPTVN+ D+ +L  F  DFGQ+G
Sbjct: 387 KLANPPLSMQDISRSLASVKPTVNNTDLDRLEAFKNDFGQDG 428


>Z72518-2|CAA96700.1|  613|Caenorhabditis elegans Hypothetical
           protein ZC374.2 protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 948 HVRLXTPGAIEMTWIDVPSDQTXRAASYNVRHVEI 844
           H R  T G + +TW +VP     +  +YNV + E+
Sbjct: 301 HFRTATQGIVNLTW-EVPPTMQNKIVAYNVEYSEM 334


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 827 PTVNDDDMVKLRKFMEDFGQEG*A*ICFNDKLRLNNYNYTKYE 699
           P    DD V      E FG    A +C++  + LNN N+  YE
Sbjct: 317 PKTPPDDWVHWGDEAEKFGMIEEAAVCYDRAIHLNNENWKFYE 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,797,535
Number of Sequences: 27780
Number of extensions: 350005
Number of successful extensions: 766
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)