Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H11
         (949 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   7.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   9.3  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 746 FNDKLRLNNYNYTKYEYVK 690
           +N+K   NN NY K  Y K
Sbjct: 100 YNNKYNYNNNNYNKKLYYK 118


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 743 NDKLRLNNYNYTKYEYVKKL 684
           N K   NN NY    Y KKL
Sbjct: 93  NYKYNYNNNNYNNNNYNKKL 112


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 743 NDKLRLNNYNYTKYEYVKKL 684
           N K   NN NY    Y KKL
Sbjct: 93  NYKYNYNNNNYNNNNYNKKL 112


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 872 PVTMSDMLRSLAVSKPTVNDD 810
           P+T  D+ R    + PT N D
Sbjct: 677 PITFQDVARRSVANSPTKNAD 697


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,105
Number of Sequences: 438
Number of extensions: 4253
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)