Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H07
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    86   6e-18
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    34   0.026
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.97 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    28   1.3  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   1.3  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    28   1.7  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    28   1.7  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    27   2.2  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    27   2.2  
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    27   3.0  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   5.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   6.9  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   6.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.1  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   9.1  

>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
 Frame = -3

Query: 488 KNRPREISSKKPVPVV-QVAHVKRKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIK 312
           K+ P+E+SSKKPV    +V    +K  RDPRFD L G   K +  +NYGFL+E R+ +I+
Sbjct: 14  KHAPQELSSKKPVSRFREVISEPKKFTRDPRFDSLSGNLSKDKVKKNYGFLNEYRVSEIQ 73

Query: 311 AARQELRETTDPEKQIKXXXXXXXLNDQHKACKRNKLDREVAQKNRDNIEKQFREGKQPH 132
             R EL+   D E+          L  + +     +    V  + R   +++ +EGK+P 
Sbjct: 74  QLRDELKICKDQERAESIRQTLKSLLSKMERHLEEERAERVMHEFRAQEKERVKEGKKPF 133

Query: 131 FKNKSELRVEALVNQYESLKKEGTSRVQRHL--KRREQKMKKRSH 3
           +  ++E +    +++Y+S+  EGT  + +++  KRR +  K++ H
Sbjct: 134 YLKRNEQKKLIQMDKYKSM--EGTKALDKYIEKKRRRRAQKEKKH 176


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = -3

Query: 656  EIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEA 546
            E+++ ER S + ELA L  E LQ L+EK+GA V+  A
Sbjct: 2396 ELQEAERKS-QQELADLVTESLQVLQEKVGATVFARA 2431


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 40/202 (19%), Positives = 81/202 (40%), Gaps = 7/202 (3%)
 Frame = -3

Query: 641 ERTSIRSELASLSFEELQQLKEKIGAKVYKEA---LFGTKEKVNVPPKVFKRENKNRPRE 471
           ++TS++  +   + ++    K     K+ KEA   +     K +V PK  K+E K     
Sbjct: 5   DKTSVKKSVKETASKKGAIEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSP 64

Query: 470 ISSKKPVPVVQVAHVKRKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIKAARQELR 291
             SKK V   + +  K +   +   +    E +    S++    SE      +++  E  
Sbjct: 65  EPSKKSVKKQKKSKKKEESSSESESESSSSESESSS-SESESSSSESESSSSESSSSESE 123

Query: 290 E----TTDPEKQIKXXXXXXXLNDQHKACKRNKLDREVAQKNRDNIEKQFREGKQPHFKN 123
           E     T+ +K+          +++ +     K++ +    +  + E    E +     +
Sbjct: 124 EEVIVKTEEKKESSSESSSSSESEEEEEAV-VKIEEKKESSSDSSSESSSSESESESSSS 182

Query: 122 KSELRVEALVNQYESLKKEGTS 57
           +SE   E +V + E  KKEG+S
Sbjct: 183 ESE-EEEEVVEKTEE-KKEGSS 202


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = -3

Query: 755 NNPYYKKSKPC----DLIQYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQ 588
           N P  K+  P     DLI  +L +M    D + ++V    D+E   + + L  LS  E  
Sbjct: 222 NEPGCKRISPIPSIDDLIAQMLKQMLDQSDKDRAYVKIEGDDEVVLLMNNLGGLSMLEFS 281

Query: 587 QLKEKIGAKVYKE 549
            +  K+   + KE
Sbjct: 282 AISHKVKEALAKE 294


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/125 (19%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
 Frame = -3

Query: 659 DEIEDNERTSIRSELASLSFEELQQLKE--KIGAKVYKEALFGTKEKVNVPPKVFKRENK 486
           + I   E   ++ E      E+ ++L+E  KI AK  KE     KE++ +  +  +R  +
Sbjct: 88  ERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQ--QRRKE 145

Query: 485 NRPREISSKKPVPVVQVAHVKRKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIKAA 306
            R +++  K+    ++   +  KE +  + +    +  +K+ + N  F+++ +  ++   
Sbjct: 146 ERDQKLREKEEAQRLRQEQILNKERQQLKLNNFFTKGVEKRIAPNENFVAD-KTDELNEF 204

Query: 305 RQELR 291
            +E R
Sbjct: 205 EKEFR 209


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -3

Query: 722 DLIQYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKE 549
           D I+Y LLK      + +  ++E+E +E   +R  L  L    LQ  K  I  ++ K+
Sbjct: 347 DTIRYYLLKRGRLTSDSNFDIEELEKDEEHDLRRSLGVL-LSRLQSKKLFISNEIQKQ 403


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 692 SCSEDNEDSHVD-EIEDNERTSIRSELASLSFEELQQLKEK 573
           S  EDN     D E +D+ +    S L    FEEL+ L+EK
Sbjct: 38  SVDEDNTSVFEDVEAQDSRQKRFSSTLEGNRFEELRSLREK 78


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
 Frame = -3

Query: 536 TKEKVNVPPKVFKRENKNRPREISSKKPVPVVQVAHVKRKEVRDPRFDPLCGEFDKKQFS 357
           +K K NVP K+FK+  K     IS K+     ++   K+  V    +  + G++D    S
Sbjct: 23  SKNKENVPGKLFKK-FKCPSLVISEKRK----ELPLRKKPRVNYSEYGSVDGKYDSAYVS 77

Query: 356 QNYGFLSELRMKDIKAARQELRE-TTDPEKQIKXXXXXXXLNDQHKAC 216
           +N   L+ ++  +      E R+ +T  +KQ           D  K C
Sbjct: 78  ENVSGLATIKEANRLILNHERRDPSTVIKKQFSVPKPIKGHEDISKLC 125


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/70 (24%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
 Frame = -3

Query: 215 KRNKLDREVAQKNRDNIEKQFREGKQPHFKNKSELRVEALVNQYESLKKEGTSRV--QRH 42
           ++ +L++E  + NR+ +EK+  E ++   K++ E R + L+ + E  +KE    +  Q+H
Sbjct: 104 EKQRLEQE--RFNRELLEKKRIEAERQRLKDEEERRKKELMEK-EKKEKERIRLIEEQKH 160

Query: 41  LKRREQKMKK 12
            +  ++++K+
Sbjct: 161 KENEQRRLKQ 170


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -3

Query: 197 REVAQKNRDNIEKQFREGKQPHFKNKSELRVEALVNQYESLKKEGTSRVQRHLKRREQKM 18
           R VA++    I +       P  +  S+L +E    +Y  LKKE   R +R  K+ +QK 
Sbjct: 243 RNVARRKPAKIRETKEYTPFPPAQPPSKLDLEIESGEY-FLKKEEKERKKRAEKKEQQKE 301

Query: 17  KKR 9
           KK+
Sbjct: 302 KKK 304


>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -3

Query: 659 DEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKVFKRENKNR 480
           DE+   E  S+    AS S+E+L         K   E+LF +   + V     KR++KN 
Sbjct: 130 DELLATEPISLSINPASTSYEKLTVSSPNSFLKNQDESLFLSSSPITVSQGT-KRKSKNS 188

Query: 479 PREISSKK 456
              +  KK
Sbjct: 189 NSTVKKKK 196


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 665 HVDEIEDNERTSIRSELASLSFEELQ 588
           HV++ ED  RT ++S+ A +S  E+Q
Sbjct: 93  HVEDKEDLNRTVVKSQEAIVSIPEIQ 118


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/65 (20%), Positives = 35/65 (53%)
 Frame = -3

Query: 770  EKSKINNPYYKKSKPCDLIQYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEEL 591
            E  ++     K S+ CDL +  LL++S  + ++   ++E+E +E   + +++  ++ +  
Sbjct: 874  ELEQLEKDINKSSEDCDLQKKKLLEVSSKQGSQAPFLNELE-SEYEKLEADIQEMAQKSR 932

Query: 590  QQLKE 576
             ++ E
Sbjct: 933  TEILE 937


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -3

Query: 230 QHKACKRNKLDREVAQKNRDNIEKQFREGKQPHFKNKSELRVEALVNQYESLKKEGTSRV 51
           +H + + N  D E+ +   ++  +   + K+ +  N SE  ++  +     L KE     
Sbjct: 224 EHNSAEEN--DPELQRVIEESKRQAEEDAKRRNMANDSEAELQKAIQ----LSKEEDEAR 277

Query: 50  QRHLKRREQK 21
           QRH + REQ+
Sbjct: 278 QRHQREREQQ 287


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 200  DREVAQKNRDNIEKQFREGKQPHFKNKSELRVEALVNQYESLKKEGT 60
            +RE    N DN  + F +     FKN+S L  +  +     + KEG+
Sbjct: 1492 ERENVSSNEDNSPEAFEDIFGILFKNESGLEEQQNLEPSSQMDKEGS 1538


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -3

Query: 683 EDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKV 504
           E   DSHVD IED    + + +  +   E L+ L   +    ++  L     +++V  K 
Sbjct: 21  ETEYDSHVDSIEDIHSLASKRKKLNEKKENLEDL-TLLKTSAFELKLNELIREISVRGKY 79

Query: 503 FKRENK--NRPREISSKKPV 450
           F+  N    + +++  K PV
Sbjct: 80  FRHANTFVEKIKDLIFKTPV 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,945
Number of Sequences: 5004
Number of extensions: 51235
Number of successful extensions: 229
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)