Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H06
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   2.0  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   3.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   3.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   4.6  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   8.0  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   8.0  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    24   8.0  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 135  LFQKENFAYKTILLHHKAALSTFYFIIALCLIISPAD 245
            L   ENF    +LLHH  + S    + A C ++ P++
Sbjct: 1011 LHSLENFIKHVLLLHHPKSCSVVKCLWASCDMVLPSE 1047


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 231 ISPADNKHVFIIQCCMFS-KGTSILRFYITIKPILCAEKENI 353
           I+   NK+    +  +FS  G   L++  T+  I CA+K+NI
Sbjct: 145 INQVQNKNTLRSRILIFSLTGDVALQYIPTMNCIFCAQKKNI 186


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 105 KSADVAKFFLLFQKENFAYKTILLHHKAALST 200
           K AD  + F  F +E     TIL HH   LST
Sbjct: 192 KFADFERSFTFFCREYQNSDTILQHHPLILST 223


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 341 LGT*YRFYCYVKP*Y*CAFGKHTALYYEDVFVIC 240
           LG   R +  VKP     FGK   L +E +F+ C
Sbjct: 206 LGKGIRLFERVKPSMIMPFGKRGLLVFESLFIHC 239


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 DIMCREGKHTALQEVLPGEDYEDQRSIHL 412
           DI+   G  T  +E L GED+E   S +L
Sbjct: 890 DILLYLGSRTQREEYLYGEDWEAYHSANL 918


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 FAYKTILLHHKAALSTFYFIIALCL 227
           + YK ILL ++  +  +Y+ + +CL
Sbjct: 53  YDYKNILLKYELFIIYYYYYLLICL 77


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 87  SFKIDPKSADVAKFFLLFQKENFAYKTILLHH--KAALSTFYFIIALCLIISPADNKHVF 260
           S ++DP+     ++FLL +  N   + + +H+   A +   +     C + +   N+H  
Sbjct: 253 SHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKNQH-- 310

Query: 261 IIQC 272
           I+QC
Sbjct: 311 ILQC 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,627
Number of Sequences: 5004
Number of extensions: 35404
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)