Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_H06
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665...    28   2.5  
11_04_0347 + 16628129-16628244,16628343-16628512,16629141-166294...    27   4.4  
08_01_0451 + 3979323-3979566,3979649-3980012,3980112-3980330,398...    27   4.4  
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131...    27   4.4  
06_02_0013 - 10581449-10585105                                         27   5.8  
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477...    27   7.7  
10_01_0164 + 1863890-1866253                                           27   7.7  
01_06_1775 - 39808794-39808919,39809021-39809127,39810594-39812178     27   7.7  

>04_03_0256 -
           13564070-13564456,13564543-13565299,13565734-13566535,
           13566884-13566917
          Length = 659

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 102 PKSADVAKFFLLFQKENFAYKTILLHHKAALSTFYFIIALCLII 233
           P+SA  + FF  + K+    KTIL+   AA+     ++ + + +
Sbjct: 299 PQSATYSLFFCPYTKQKLQTKTILVSILAAIGALILVVVVAIYV 342


>11_04_0347 +
           16628129-16628244,16628343-16628512,16629141-16629409,
           16630337-16630475,16630573-16630639,16630721-16630842,
           16630946-16631085
          Length = 340

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/50 (22%), Positives = 29/50 (58%)
 Frame = +2

Query: 257 LHNTMLYVFQRHINITVLHNNKTDIMCREGKHTALQEVLPGEDYEDQRSI 406
           L +T ++  +R+ ++++ HN   D++    K  A+  +  GE+++ + +I
Sbjct: 176 LEDTEIHKGERNYDVSLPHNKIPDLLSALAKKMAIPAMPSGEEFKPEAAI 225


>08_01_0451 +
           3979323-3979566,3979649-3980012,3980112-3980330,
           3980713-3980872,3981680-3981817,3982161-3982448
          Length = 470

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 138 FQKENFAYKTILLHHKAALSTF--YFIIALCLIISPADNKHVFIIQCCMFSKGTSILRFY 311
           ++ E++  KT+  H + + +T   + I     +       HV  +QC MF  GT++    
Sbjct: 343 WRDEHYIPKTVDEHLEVSRATVGAFEIACASFVREQKGEHHVSTVQCYMFQHGTTMHDAC 402

Query: 312 ITIKPIL 332
           + IK ++
Sbjct: 403 VKIKELI 409


>02_03_0387 -
           18412064-18412144,18412280-18412361,18412922-18413142,
           18413387-18413745,18413834-18414443,18414546-18414605,
           18414685-18414751,18414843-18414936,18415012-18415125,
           18415242-18415308,18415386-18415551,18416587-18417080
          Length = 804

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 344 GKHTALQEVLPGEDYED-QRSI 406
           GKH   +E++ GEDYED Q+S+
Sbjct: 473 GKHAESEELVFGEDYEDLQKSL 494


>06_02_0013 - 10581449-10585105
          Length = 1218

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 363 CNAVCFPSRHIISVLLLCKTVILMCLW 283
           CNA  F +  ++ +LLL K+V    LW
Sbjct: 134 CNATAFAASLVLIILLLSKSVTRQNLW 160


>10_08_0324 +
           16747117-16747330,16747432-16747559,16747675-16747744,
           16747832-16747988,16748089-16748701,16749132-16749653,
           16749686-16750279,16750359-16750709,16750808-16751395
          Length = 1078

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 24  LVSSTLSAYLPATRRWCIWCYSFKIDPKSAD 116
           L+  TLS      RRW  +C  F I+P++ +
Sbjct: 338 LLFDTLSETAEFARRWVPFCKKFTIEPRAPE 368


>10_01_0164 + 1863890-1866253
          Length = 787

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +3

Query: 87  SFKIDPKSADVAKFFLLFQKENFAYKTILLHHKAALSTFYFIIALCLIISPADNKHVFII 266
           S+KI  +  +V  ++L  + + F+Y+  L+ HK  L+T +   +   I S    + V I 
Sbjct: 522 SYKITLEDGEVDVYWLNTKDQEFSYEQ-LIFHKEELATVWVYQSTSFIKSKGSGRVVTIA 580

Query: 267 QCCMFSKGTSI 299
               F+    +
Sbjct: 581 ASTSFTNSIPV 591


>01_06_1775 - 39808794-39808919,39809021-39809127,39810594-39812178
          Length = 605

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 114 DVAKFFLLFQKENFAYKTILLHHKAALSTFYFIIALC 224
           +VAKF L  Q   + YK+ L  +K  L+T   +   C
Sbjct: 358 EVAKFELCIQLHAYCYKSGLCLYKPVLNTLIAVYGKC 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,540,896
Number of Sequences: 37544
Number of extensions: 196390
Number of successful extensions: 421
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)