Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_H06
(412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 29 0.99
L11247-7|AAA28003.3| 91|Caenorhabditis elegans Hypothetical pr... 28 3.0
AY255665-1|AAQ96602.1| 91|Caenorhabditis elegans MiRP2 protein. 28 3.0
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 4.0
AY255667-1|AAQ96604.1| 159|Caenorhabditis elegans MiRP4 protein. 27 4.0
AF099925-6|AAC69501.1| 159|Caenorhabditis elegans Mirp k channe... 27 4.0
Z81062-6|CAB02949.2| 320|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacti... 27 7.0
AY255666-1|AAQ96603.1| 164|Caenorhabditis elegans MPS-3 protein. 26 9.2
AF099925-5|AAZ94292.1| 164|Caenorhabditis elegans Mirp k channe... 26 9.2
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 29.5 bits (63), Expect = 0.99
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 168 ILLHHKAALSTFYFIIALCLIISPADNKHVFIIQCCMFSKGTSILRFYITIKPI 329
ILL + T + II L II + K F+ CC+ S G SI+ I P+
Sbjct: 23 ILLTVTSITGTIFNIIVLFAIIFRVNKKDGFLKICCLKSFGNSIVCIGYLIWPV 76
>L11247-7|AAA28003.3| 91|Caenorhabditis elegans Hypothetical
protein F09G8.9 protein.
Length = 91
Score = 27.9 bits (59), Expect = 3.0
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -2
Query: 369 TSCNAVCFPSRHIISVLLLCKTVILMCL 286
+SCN + +P+++ +L++ T + +CL
Sbjct: 30 SSCNRISYPTKYFDFLLVIIMTFVFLCL 57
>AY255665-1|AAQ96602.1| 91|Caenorhabditis elegans MiRP2 protein.
Length = 91
Score = 27.9 bits (59), Expect = 3.0
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -2
Query: 369 TSCNAVCFPSRHIISVLLLCKTVILMCL 286
+SCN + +P+++ +L++ T + +CL
Sbjct: 30 SSCNRISYPTKYFDFLLVIIMTFVFLCL 57
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.5 bits (58), Expect = 4.0
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +3
Query: 168 ILLHHKAALSTFYFIIALCLIISPADNKHVFIIQCCMFSKGTSILRFYITIKPILCAEK 344
I++ H + S F ++ + + N++VFII CC F GTS + T++ L +EK
Sbjct: 4901 IIVFHPISNSIFEYLKLAKVWSLISRNQNVFIIICC-FENGTSHTEWTGTLRS-LASEK 4957
>AY255667-1|AAQ96604.1| 159|Caenorhabditis elegans MiRP4 protein.
Length = 159
Score = 27.5 bits (58), Expect = 4.0
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +3
Query: 138 FQKENFAYKTILLHHKAALSTFYFIIALCLII--SPADNKHVFIIQC-CMFSKGTSILRF 308
F K + K +LL + S + + L++ S ADN + Q C+ G L
Sbjct: 20 FDKMSETKKNVLLSLHSLSSLIHVAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLII 79
Query: 309 YITIKPILCAEKENIQHCRKFF 374
I I I +E ++ H R+FF
Sbjct: 80 LILIFSIFKSEMKSDSHARRFF 101
>AF099925-6|AAC69501.1| 159|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 2, isoform a protein.
Length = 159
Score = 27.5 bits (58), Expect = 4.0
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +3
Query: 138 FQKENFAYKTILLHHKAALSTFYFIIALCLII--SPADNKHVFIIQC-CMFSKGTSILRF 308
F K + K +LL + S + + L++ S ADN + Q C+ G L
Sbjct: 20 FDKMSETKKNVLLSLHSLSSLIHVAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLII 79
Query: 309 YITIKPILCAEKENIQHCRKFF 374
I I I +E ++ H R+FF
Sbjct: 80 LILIFSIFKSEMKSDSHARRFF 101
>Z81062-6|CAB02949.2| 320|Caenorhabditis elegans Hypothetical
protein F15A4.7 protein.
Length = 320
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 126 FFLLFQKENFAYKTILLHHKAALSTFYFIIALCLIIS 236
FF+LF+ + FA T+LL+ F +I LC +S
Sbjct: 61 FFVLFRADLFASTTLLLYDIFFGRIFMYIPQLCPFVS 97
>AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacting
protein (scaffoldprotein) protein 1 protein.
Length = 998
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = -1
Query: 376 RKNFLQCCMFSF--SAHNIGF 320
RKNF QC MF F S NI F
Sbjct: 913 RKNFFQCPMFDFFYSLQNISF 933
>AY255666-1|AAQ96603.1| 164|Caenorhabditis elegans MPS-3 protein.
Length = 164
Score = 26.2 bits (55), Expect = 9.2
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 141 QKENFAYKTILLHHKAALSTFYFIIALCLIISPADNKHVFIIQC-CMFSKGTSILRFYIT 317
+K+N L ++ FYF++ S ADN + Q C+ G L I
Sbjct: 31 RKKNVLLSLHSLSSLIHVAMFYFLLVQW---SKADNPVLTHFQIFCLVIIGIGFLIILIL 87
Query: 318 IKPILCAEKENIQHCRKFF 374
I I +E ++ H R+FF
Sbjct: 88 IFSIFKSEMKSDSHARRFF 106
>AF099925-5|AAZ94292.1| 164|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 2, isoform d protein.
Length = 164
Score = 26.2 bits (55), Expect = 9.2
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 141 QKENFAYKTILLHHKAALSTFYFIIALCLIISPADNKHVFIIQC-CMFSKGTSILRFYIT 317
+K+N L ++ FYF++ S ADN + Q C+ G L I
Sbjct: 31 RKKNVLLSLHSLSSLIHVAMFYFLLVQW---SKADNPVLTHFQIFCLVIIGIGFLIILIL 87
Query: 318 IKPILCAEKENIQHCRKFF 374
I I +E ++ H R+FF
Sbjct: 88 IFSIFKSEMKSDSHARRFF 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,740,467
Number of Sequences: 27780
Number of extensions: 200343
Number of successful extensions: 523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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