Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_G23
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 235 4e-63
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 225 6e-60
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 2.4
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 3.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 3.2
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 3.2
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 5.6
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.6
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 9.8
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.8
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 9.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 9.8
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 235 bits (576), Expect = 4e-63
Identities = 113/170 (66%), Positives = 137/170 (80%), Gaps = 2/170 (1%)
Frame = -2
Query: 817 EQKXE--GSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKXSNPESKVFYLKMKG 644
EQK E G+ + ++ KEYR K+E+EL I D+L +L+KHLIP ++ ESKVFY KMKG
Sbjct: 69 EQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYKMKG 128
Query: 643 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILN 464
DYYRYLAE A GE R + S + Y+ A EI+ A++ PTHPIRLGLALNFSVFYYEILN
Sbjct: 129 DYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILN 188
Query: 463 SPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 314
SPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 189 SPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 225 bits (550), Expect = 6e-60
Identities = 108/170 (63%), Positives = 133/170 (78%), Gaps = 2/170 (1%)
Frame = -2
Query: 817 EQKXE--GSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKXSNPESKVFYLKMKG 644
EQK E G+ R+ + KEYR K+E EL +I +DVL +L+KHLIP + ESKVFY KMKG
Sbjct: 68 EQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYKMKG 127
Query: 643 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILN 464
DYYRYLAE GE + S +AY+ A +I+ A++ PT P+RLGLALNFSVFYYEIL+
Sbjct: 128 DYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILD 187
Query: 463 SPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 314
SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 188 SPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 161 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 289
L + SV+I +TFS V+R L +T + VCW C L+ A+
Sbjct: 43 LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 634 RYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 488
RY+ ++ E R ED+++A + ++ + A +QP H I L LA+N S
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 814 QKXEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPK 689
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 3.2
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Frame = -2
Query: 817 EQKXEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKXSNPESKVFYLKM-KGD 641
E E+ Q++A+ Y+V + +LRE YD LG + +P ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 640 YYR-YLAEVATGETRHSVV--EDSQKAYQDAFEISKAKMQ 530
+R Y+ E+ + ++ E KA +D E SK ++Q
Sbjct: 100 SFRDYVGELNLLKELCKMINEEPELKAIEDT-EESKKQLQ 138
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -2
Query: 715 LLDKHLIPKXSNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 578
+++K IP+ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -2
Query: 577 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 404
Q+ D E + P H L F S Y ++ D QLA Q F ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474
Query: 403 DTLNEDSYKDSTLIMQLLRDN 341
+ L +++ S ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 70 YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 195
++T D +F + G++R RL+TF GFG PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 524 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 625
C L+F L + K+ L+ I+Y + GFS H C
Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 796 ERKQQMAKEYRVKVEKELREIXYDV--LGLLDKHLIPKXSNPE 674
E++Q A +YR+KVE+ +I V + L+ L + SNPE
Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -2
Query: 703 HLIPKXSNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDS 578
H SNP S K KG++ Y A G ++ +DS
Sbjct: 225 HTSKTYSNPSSFATRKKEKGEHLSYAEAAAVGTQAKNIKKDS 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,790
Number of Sequences: 5004
Number of extensions: 60583
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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