Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G21
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...   114   8e-27
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...   113   1e-26
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    31   0.091
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    30   0.21 
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|...    27   2.0  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   4.5  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    25   7.9  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   7.9  

>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  114 bits (275), Expect = 8e-27
 Identities = 59/116 (50%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
 Frame = -3

Query: 393 MDVNVALQEVLKTALIHGGLVXGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 214
           + V  +L+EVLK AL+H GL  G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 30  LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89

Query: 213 HQIPLVKVDNNKKLGEWAGLCKIDQGWQGKENCRLLLCCLSKISD--EETPALDVL 52
            Q PLVKV + K LGEWAGLC +D+    +   +++ C    ++D  E++ AL  L
Sbjct: 90  SQTPLVKVADPKILGEWAGLCVLDRDGNAR---KVVGCSCVAVTDYGEDSVALQTL 142


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score =  113 bits (273), Expect = 1e-26
 Identities = 58/116 (50%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
 Frame = -3

Query: 393 MDVNVALQEVLKTALIHGGLVXGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 214
           + V  AL+EVLK AL+H GL  G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 27  VSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 86

Query: 213 HQIPLVKVDNNKKLGEWAGLCKIDQGWQGKENCRLLLCCLSKISD--EETPALDVL 52
            + PL+KV + K LGEWAGLC +D+    +   +++ C    ++D  E++ AL  L
Sbjct: 87  SETPLIKVADPKVLGEWAGLCVLDRDGNAR---KVVGCSCVAVTDYGEDSAALQKL 139


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 31.5 bits (68), Expect = 0.091
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = -3

Query: 387 VNVALQEVLKTALIHGGLVXGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 208
           +N  + + +K A     ++ G+ E  KA+ K +  L +LA +         +  LC ++ 
Sbjct: 37  LNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNN 96

Query: 207 IPLVKVDNNKKLGE 166
           +P +   + + LGE
Sbjct: 97  VPYLYTVSKELLGE 110


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 327 GLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 169
           GL+     ++ ++A L ++A + D       + ALC +  +P   V N  +LG
Sbjct: 135 GLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187


>SPCC1442.15c |cox18||mitochondrial inner membrane protein
           Cox18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 202

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 362 STSCSATFTSMLLPDKMGLVGTSTSTSAMVVDYLTVLRTGKRPSAGRI 505
           ST     FT + LPD  G++      + + V YLT +   KRPS  R+
Sbjct: 112 STEGMLWFTDLTLPDPHGVL-----PAVLAVTYLTNMSILKRPSDSRL 154


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 32   RLAGSPCSTSNAGVSSSEIFDRQHRSSRQ 118
            R+AG P S  +     SE ++++HR++R+
Sbjct: 942  RMAGIPFSILSRATEISENYEKKHRNARK 970


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 185 TTKSLENGLVSARLTKDGK 129
           TTK L +G  + +LTKDGK
Sbjct: 41  TTKMLVDGAGAIKLTKDGK 59


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 272 WLRTVMKPHTRNLFRLCATNIRFHWSRLTTTKSLE 168
           ++ +V  P    L+RLC++  R  W     ++SL+
Sbjct: 220 FILSVFHPDAARLYRLCSSLKRICWELYDPSRSLD 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,030
Number of Sequences: 5004
Number of extensions: 49179
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)