Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_G19
(498 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24) 33 0.099
SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 3.7
SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25) 28 4.9
SB_48395| Best HMM Match : MAM (HMM E-Value=0) 28 4.9
SB_10085| Best HMM Match : Sod_Fe_N (HMM E-Value=1.4) 28 4.9
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10) 27 6.5
SB_34131| Best HMM Match : DUF1289 (HMM E-Value=3.7) 27 6.5
SB_28109| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51) 27 6.5
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26) 27 8.6
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_13608| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)
Length = 1142
Score = 33.5 bits (73), Expect = 0.099
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 345 QMPFVLSHWFRLEPSLLQKSQTD--PRTSMPTTTITQETLDAKLHLQL 208
Q P W RL+ + Q QTD P TS P T +T T + H QL
Sbjct: 487 QEPSPAEFWSRLKNAKTQSKQTDSSPSTSKPATPVTSPTEGKQSHSQL 534
>SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 32.3 bits (70), Expect = 0.23
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = -3
Query: 337 LRFEPLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPK 158
LR SP +PPP + P H+ H + ++R A T + S+ G+P+
Sbjct: 489 LRAYTPASPDIKPPPAVA-TPPHQPCHTSEQRQRSQRPPALSPQRTPTTTPSPSELGSPE 547
Query: 157 QAANVRPTPGHLXAWXKHYEXTCDP 83
++ P H H E CDP
Sbjct: 548 KSPFADSDPQHESYARSHLE-QCDP 571
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 30.3 bits (65), Expect = 0.92
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = -3
Query: 331 FEPLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQA 152
++P SP PP PS Y ++ + +V PP L + G P
Sbjct: 761 YDPSESPAGMTPPPTSTSPSGWQGRGRYPSQPSPTDVLPP------TLPQAPYPGGPPSM 814
Query: 151 ANVRPTPGH 125
+ + P PGH
Sbjct: 815 SGMPPPPGH 823
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -3
Query: 310 RTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKG 167
+ +PP IPD P +H N+Y ++ + +L+ + DKG
Sbjct: 2 KPRPPNLIPDPPEFRHYGNHYGESSWNKDSFRALLENNDLVDPNLDKG 49
>SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25)
Length = 420
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -1
Query: 324 HWFRLEPSLLQKSQTDPRTSMP--TTTITQETLDAKLHLQLMLPRNCLVLAQTKG 166
HW R+E S ++ D T P T T+T D ++ L+ + LA+T+G
Sbjct: 111 HWIRVERS--REKMVDLTTGAPWETVTLTMLGRDKQVFFDLLDEARTMALAKTEG 163
>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
Length = 901
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 212 WRCNFASSVSCVIVVVGMLVRGSVWDFWRRLGSRRNQWLKTKGICMLPTKEEVPES 379
W + SSV + V + + W R G + W++ KGI +VP+S
Sbjct: 388 WYNMYGSSVGALTVYIKTAEQEQA--VWSREGDQGQNWIQAKGIIASKVAFKVPDS 441
>SB_10085| Best HMM Match : Sod_Fe_N (HMM E-Value=1.4)
Length = 371
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 420 RLKFHYATFHLHCRLSGTSSLVGSIQMPFVLSHWFRLEP 304
++ + A+FH R + T +G + ++L W RL+P
Sbjct: 327 KIWYFEASFHTPYRANNTKVCMGRLYFRWILVPWVRLDP 365
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 331 FEPLVSPRTQPPPEIPDGPS 272
+ P SP+T P P IP PS
Sbjct: 658 YPPKTSPKTTPKPHIPPAPS 677
>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
Length = 282
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 238 DARREVAPPIDVTKELLSASSDKGAPKQAANV 143
+A +++ P DV K L+ +SDK PK+ A V
Sbjct: 119 EAAKDIKKP-DVQKRPLAVNSDKSPPKKVAKV 149
>SB_34131| Best HMM Match : DUF1289 (HMM E-Value=3.7)
Length = 235
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +2
Query: 296 RRLGSRRNQWLKTKGICMLPTKEEVPESL 382
RR+ SR WL GIC PTK E PE L
Sbjct: 23 RRMLSRFGIWLLV-GICSDPTKCESPERL 50
>SB_28109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 343 NALRFEPLVSPRTQPPPEIPDGPSHKH 263
N +E +VSP TQ P +GP KH
Sbjct: 124 NPFHYERVVSPGTQQDPVEDNGPISKH 150
>SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)
Length = 472
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +2
Query: 296 RRLGSRRNQWLKTKGICMLPTKEEVPESL 382
RR+ SR WL GIC PTK E PE L
Sbjct: 260 RRMLSRFGIWLLV-GICSDPTKCESPERL 287
>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
Length = 1362
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 306 PSLLQKSQTDPRTSMPTTTITQET 235
PSLLQ S + P ++ T +I Q+T
Sbjct: 284 PSLLQSSDSSPNSTSSTPSINQQT 307
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 318 FRLEPSLLQKSQTDPRTSMPTTTITQETLDAKLHLQLMLPRNCLVLA 178
+ + + Q T T+ PTTTI + LH Q + P +LA
Sbjct: 680 YHIVSGMCQDFPTTVLTTAPTTTIPTTSPACNLHCQTLQPDGTCILA 726
>SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -1
Query: 375 SGTSSLVGSIQMPFVLSHWFRLEPSLLQKSQTDPRTSMPTTTITQETLDAKLHLQLMLPR 196
+ T+S S+Q L W + + L++ TDP T T E L A ++ +L
Sbjct: 585 TSTTSEFASVQGSMRLVFWAIFDKTELEEFNTDPSFPTKITQSTGEVLFALFNIASILVA 644
Query: 195 NCLVLAQTKGXLNKL 151
+++A K+
Sbjct: 645 INMLIAMMSNSFQKV 659
>SB_13608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 295 PEIPDGPSHKHAHNYYYTRDARREVAP-PIDVTKELLSASSDKGAPKQAANVRPTPG 128
P P P H+ + + +R P P+D+ + D PK A++ PT G
Sbjct: 510 PTPPGSPQHEKNTTHGVVKVPQRSRTPQPLDLPCSTMPKRLDYNRPKSASSPTPTGG 566
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,996
Number of Sequences: 59808
Number of extensions: 294040
Number of successful extensions: 851
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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