Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_G18
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 114 9e-26
11_01_0535 + 4234282-4235082 35 0.089
09_01_0057 - 916973-917287,917371-917495,917587-918241 31 0.83
02_04_0581 - 24068122-24068355,24068693-24068906,24069675-240697... 31 1.1
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 29 5.9
06_03_1077 + 27417255-27417386,27417504-27417557,27417637-274178... 29 5.9
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 28 7.8
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808... 28 7.8
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813... 28 7.8
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 114 bits (274), Expect = 9e-26
Identities = 58/131 (44%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = -3
Query: 815 NLFRNXAYYWLFALYVAYHVNHPLYTAPCTTCYYIGLGGFVLCELGNLSIHILLKNLR-P 639
N+FRN AYYW F Y+AY+ NHPLYT IG G +LC++ N HILL+NLR P
Sbjct: 187 NVFRNCAYYWTFGAYIAYYCNHPLYTPVSELQMKIGFGFGILCQIANFYCHILLRNLRSP 246
Query: 638 PGTKIRRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAV 459
G +IP+ L N V+C NYT E WL F I T+ +F M
Sbjct: 247 SGNGGYQIPR------GFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAASIMTN 300
Query: 458 WAIGKHRNYKK 426
WA+GKHR KK
Sbjct: 301 WALGKHRRLKK 311
>11_01_0535 + 4234282-4235082
Length = 266
Score = 34.7 bits (76), Expect = 0.089
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = -3
Query: 749 PLYTAPCTTCYYIGLGGFVLCELGNLSIHILLKNLRPPGTKIRRIPKPDGNPFSLLLNFV 570
PL A C +GL FV N++ L L+ G K +IPK DG L + V
Sbjct: 152 PLTVARCL----VGLALFVWGMWTNIAADRELLRLKEAG-KGYQIPK-DG-----LFDLV 200
Query: 569 SCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPD-YPKGRKA 393
+CPNY E WL + ++ A F + A + Y +F D YP RKA
Sbjct: 201 ACPNYFGETVEWLGYALVAWTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYPASRKA 260
>09_01_0057 - 916973-917287,917371-917495,917587-918241
Length = 364
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 746 LYTAPCTTCYYIGLGGFVLCELGNLSIHILLKNLRPPGTKIRR 618
LY+AP + IG C+ + S+ L L PPG I+R
Sbjct: 296 LYSAPASPSGVIGASACFSCDSSSSSVDSLFAALEPPGRPIKR 338
>02_04_0581 -
24068122-24068355,24068693-24068906,24069675-24069755,
24069853-24070024,24070806-24070884,24071384-24071477,
24072065-24072147,24072284-24072401,24072457-24072461
Length = 359
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 614 ECGVSSCRADEGSSKVCECSGFLIRKEQNLQV--LCSNK*YRE 736
E G ++C AD CEC G + +N +C+NK +R+
Sbjct: 50 EAGCTNCSADSTCKDDCECRGLYMSCSKNCHCSDMCTNKPFRK 92
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = -3
Query: 815 NLFRNXAYYWL-FALYVA 765
N++R+ YYWL FA+YVA
Sbjct: 438 NMYRDLGYYWLRFAIYVA 455
>06_03_1077 +
27417255-27417386,27417504-27417557,27417637-27417801,
27418131-27418496
Length = 238
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 223 WVSDDILEGSG---FCLFWYATVWCGNNK*DYYNRTG 122
WV D G F + W +W + + DYYN+TG
Sbjct: 43 WVIDPTTYGDSKTHFFVSWTVLIWMHDIQADYYNKTG 79
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 28.3 bits (60), Expect = 7.8
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 410 GSLGIPSCSCDVYRWPK 460
G +G+ +C C++Y WP+
Sbjct: 23 GRIGVGACGCEMYVWPR 39
>09_04_0483 +
17979566-17980019,17980242-17980321,17980431-17980895,
17981460-17981597,17982574-17982660,17982781-17982909,
17983034-17983225,17983393-17983479,17983707-17984378
Length = 767
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = -3
Query: 815 NLFRNXAYYWL-FALYVA 765
N++R+ YYWL FA+Y+A
Sbjct: 478 NMYRDLGYYWLRFAIYIA 495
>05_04_0083 +
17780665-17780764,17781070-17781124,17781193-17781313,
17781361-17781429,17782047-17782274,17782477-17782666,
17783303-17783694,17784380-17784427,17784816-17785400
Length = 595
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 229 PWWVSDDILEGSGFCLFWYATVWCGNNK 146
PWW++ LEGSG W W +K
Sbjct: 35 PWWLTGHDLEGSGCVWEWGLHPWLPKSK 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,670,961
Number of Sequences: 37544
Number of extensions: 479193
Number of successful extensions: 1050
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -