Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G18
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   3.4  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    23   3.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.8  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 644 RPPGTKIRRIPKPDGNP 594
           RPP  ++RR  KP+  P
Sbjct: 249 RPPHPRLRREAKPEAKP 265



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 662 ILLKNLRPPGTKIRRIPKPDGNP 594
           + +   RPP  ++RR  +P+  P
Sbjct: 103 VYISQPRPPHPRLRREAEPEAEP 125



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 662 ILLKNLRPPGTKIRRIPKPDGNP 594
           + +   RPP  ++RR  +P+  P
Sbjct: 159 VYISQPRPPHPRLRREAEPEAEP 181


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 644 RPPGTKIRRIPKPDGNP 594
           RPP  ++RR  KP+  P
Sbjct: 137 RPPHPRLRREAKPEAEP 153


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 559 LGQDTKFKRREKGFPSGLGMRRIFVPGGRR--FFKS 660
           LG +TK      G    +    IF PGG++  FF+S
Sbjct: 221 LGDNTKAAVMRLGLMEIIKFVNIFFPGGKKTTFFES 256


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 502 QRVCSLRQASIRW 464
           ++VCSLR AS  W
Sbjct: 171 RQVCSLRMASYGW 183


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 502 QRVCSLRQASIRW 464
           ++VCSLR AS  W
Sbjct: 171 RQVCSLRMASYGW 183


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 187 KNHCPLICHP 216
           KN+CPL C P
Sbjct: 344 KNNCPLHCKP 353


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 588 RKGVSVRFRNAAY 626
           +KGVS+RF N  Y
Sbjct: 551 KKGVSLRFYNVVY 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,751
Number of Sequences: 438
Number of extensions: 6476
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)