Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G09
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.58 
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   3.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   4.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   5.5  
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.2  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   9.5  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   9.5  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = +1

Query: 331 ANSXQASLMFS*RYLNPYSSTLX-GMTCCPXVIIIALSGCSAKFKXASGTGMNAGRPNAF 507
           A+S Q++L  S   ++  SSTL  G +  P       S         S    ++  P + 
Sbjct: 490 ASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSS 549

Query: 508 ANDLVNSSLVITXGDTPFNIPLTFSFSMAKLINLVRSS 621
           ++D  +S   I+ G +  +IP TFS S++ +++   SS
Sbjct: 550 SSDFSSSITTISSGISSSSIPSTFS-SVSSILSSSTSS 586


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -3

Query: 533 NEEFTKSFAKALGRPAFIPVPEAILNFALHPERAMIMTXGQHVIPKRVLEYGFKYRYENI 354
           N+E+  +F  A      +   E  L  A+H +RA++ T G  ++ KR ++    +R+  I
Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKLAMHLQRAIVRT-GITLLEKRAIKTLRSFRFGLI 513

Query: 353 ND 348
           N+
Sbjct: 514 NE 515


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -3

Query: 629 IHIDDLTRLINFAIENENVKGILNGVSPNVITNEEFTKSFAKALGRPAFIPVPEAILNFA 450
           I +D+ T   N AI  E VK +L+  +  +   + F   +A +  RP F  V   IL   
Sbjct: 312 ITVDENTLQQNMAIFFEGVKDLLSSKNSLMSFYKAFRILYALSDRRPLFTIVESQILPCV 371

Query: 449 LH 444
           LH
Sbjct: 372 LH 373


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HNHSPFWMQCEVQDXFWYWYERWSS 497
           H +    + C + D FW+ Y RW S
Sbjct: 303 HLYERCLITCALYDEFWFRYARWMS 327


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 407 VIPKRVLEYGFKYRYENINDACXEFAHLFPKKN 309
           + PK  L Y FKY    ++ AC  F+     KN
Sbjct: 278 LFPKTTLIYEFKYPAGIVSSACHSFSSSIVHKN 310


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 204 ISFAFRCAHMFGVPSIQW 257
           +SFA   AH+F  PS++W
Sbjct: 19  VSFATLLAHLFTKPSLEW 36


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 307 TFFLGKRCANSXQASLMFS*RYLNPYSSTLXGMTCCPXVI 426
           TF    RC N+    L+   RY N  S T  G +C P  +
Sbjct: 204 TFIYWDRCTNACLRLLLCYIRYTNKSSET--GFSCLPSAL 241


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 714 GWYDKEHVFTLFFGFRRTHR 655
           GW+  E+V   F  +RRTH+
Sbjct: 121 GWFVNENVLNEFEAWRRTHK 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,951
Number of Sequences: 5004
Number of extensions: 57372
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)