Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G08
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   1.8  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   5.5  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   9.5  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 83  NEFFKTKCILDFF-YDKIIFSKCLEQIVLVFVSSFL 187
           N F   +C+L F  Y+KI+F+  + + V++F+++ L
Sbjct: 602 NRFEALQCLLSFLEYNKILFTPDVRKRVIIFLNNCL 637


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 733 SDLKYRARRYIFRSQVINSIHCAMCT 656
           SDL + +R Y  RS+  + +HC  C+
Sbjct: 386 SDLSFWSREYFVRSKGKSYLHCFWCS 411


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 560 LAVQFVDSEVTMW*NHRQNSRLYLHLTW 477
           L + ++   VT+W   R     Y+H TW
Sbjct: 220 LGISYLPFVVTIWIGPRVAQEFYMHSTW 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,891
Number of Sequences: 5004
Number of extensions: 59219
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)