Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G05
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.1  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   4.1  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +1

Query: 304 CSVTYILYEIINRACYKYTLKSVKFYRKKKHLQNLFLSLRPYKLFDILTSS 456
           C ++  + +II+RA      +++  + ++   ++LF+SL PY   D+L  S
Sbjct: 798 CPISQNVIDIIHRASITSDEQTILTFTER---EDLFISLTPYLSEDVLNHS 845


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 319 ILYEIINRACYKYTLKSVKFYRKKK 393
           IL  + NRA +K+ L+++KF+ +++
Sbjct: 196 ILQLVPNRAVFKHALRAIKFWAQRR 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,010
Number of Sequences: 5004
Number of extensions: 48481
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)