Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G05
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine rece...    28   6.7  

>Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical
           protein F15A2.3 protein.
          Length = 336

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 295 LVPCSVTYILYEIINRACYKYTLKSVKFYRKKKHLQN-LFLSLRP--YKLFDILTSS 456
           +V CSV    + I+    Y+Y L  V F +K KH    +  S  P    LF +LT S
Sbjct: 99  VVQCSVVAASFSILLSFYYRYRLLKVNFKKKHKHATTFIIFSFFPTVMLLFQLLTDS 155


>U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine
           receptor, class v protein7 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 211 LNIIAK-SCSS*ITKF*YISIKTFNYNNLLVPCSVTYILYEIIN 339
           LNI+A  +C + I  + Y+ I  F  N   VP  V Y+LY++IN
Sbjct: 238 LNIVAALTCVAEIIYYCYV-IYVFGINTS-VPTRVFYLLYDVIN 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,359,843
Number of Sequences: 27780
Number of extensions: 255992
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)