Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_G04
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 31 0.15
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 30 0.36
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 0.62
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 29 0.82
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 29 0.82
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 2.5
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 3.3
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 3.3
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 27 4.4
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 7.7
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 7.7
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 7.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.7
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 31.5 bits (68), Expect = 0.15
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Frame = -2
Query: 590 LNSTNQLYEPRSDSRPRDTFNNTYYPNYEGLLYTRNFEGNILLFTNWNRNKLYCWNMDTP 411
L N+LY+ R+D+ ++ + Y P + +++ LL+ + Y W ++
Sbjct: 92 LVENNRLYQQRADALAQENLSYVYSPLFHSF---QDWVVRSLLY-HPQLEYDYVWRIEPG 147
Query: 410 YE---EENVDLLSRLDEADYRFS--ALDASGSGCYALIQRTLNSTSSKFNEEKYNFWFFS 246
+ EE D+ S ++D F+ + SG YA+ + + N W +S
Sbjct: 148 LKLVCEEKKDIFSTFKDSDIVFTNHVCERKHSGIYAMEEAIEEYKILNTQGDFSNIWVYS 207
Query: 245 NN 240
NN
Sbjct: 208 NN 209
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 30.3 bits (65), Expect = 0.36
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = -2
Query: 623 PKETYEHYVDFLNSTNQLYEPRSDS-----RPRDTFNNTYYPNYEGL---LYTRNFEGNI 468
PK+ + + L +NQ Y P D+ P + ++ YYP YEG+ ++ RN + ++
Sbjct: 389 PKDKMMEFFNSLQQSNQHYVPIIDAAIYAANPINRSDDVYYPYYEGVRRDIFLRNPDRSL 448
Query: 467 LLFTNW 450
+ W
Sbjct: 449 YVGNVW 454
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 29.5 bits (63), Expect = 0.62
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = -2
Query: 419 DTPYEEENVDLLSRLDEADYRFSALDASGSGCYALIQRTLNSTSSKFNEEKYNFWFFSNN 240
D EEN ++L F A +G +I T N + KY+ +F+SN
Sbjct: 127 DICQSEENANMLKLNFYHSLGFDLETAENTGNKRVIIHTENDLQTVQISNKYSPYFYSNY 186
Query: 239 LEELLEGSKCTK 204
+LL+ SK K
Sbjct: 187 FWDLLDDSKDKK 198
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 29.1 bits (62), Expect = 0.82
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -2
Query: 431 CWNMDTPYEEENVDLLSRLDEADYRFSAL 345
C+ + TPY+ E DLL R++ AD++ ++L
Sbjct: 260 CFALLTPYDNEQADLLHRIN-ADHKLNSL 287
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 29.1 bits (62), Expect = 0.82
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -2
Query: 431 CWNMDTPYEEENVDLLSRLDEADYRFSAL 345
C+ + TPY+ E DLL R++ AD++ ++L
Sbjct: 260 CFALLTPYDNEQADLLHRIN-ADHKLNSL 287
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 136 ILLENSNVWLADLRIT*SVHWLLLVHFDPSSSS--SRLFEKNQKLYF-SSLNFD 288
ILL+ +V DL +T WL +VH S +S S ++ K YF SLN +
Sbjct: 621 ILLDMVDVGKPDLVLTLLCRWLHMVHLYSSRTSITSWIYSIASKFYFIDSLNLE 674
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 205 LVHFDPSSSSSRLFEKNQKLYFSSLNFD 288
++ FDPSSS S L EK Q+ Y S F+
Sbjct: 20 MILFDPSSSISLLKEKVQETYKSLYPFE 47
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -2
Query: 617 ETYEHYVDFLNSTNQLYEPRSDSRPRDTFNNTYYPNYEGL---LYTRNFEGNILLFTNW 450
E+++HYV L+ +Y + P + + TYYP Y G ++ +N G+ + W
Sbjct: 404 ESHQHYVPVLDPA--IYA----ANPNKSADRTYYPYYSGFEDNIFIKNPNGSAYVGMAW 456
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 728 FTKISRASNTA--DSWEFIVPQFETQYRLEVEKYRKRPKETYEHYVDFLNSTNQL 570
FT++ + N WE + P+ R V +R KE +E Y + ST ++
Sbjct: 246 FTELLKDKNIGAYQPWELVYPKLLDDDRFYVLDSGERRKEVFEEYCKSVVSTKKI 300
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 506 EGLLYTRNFEGNILLFTNWNRNKLYCWNMDTPYEEEN 396
E +LYT EGN++L +W +DT + E N
Sbjct: 245 EKILYTAG-EGNLILAWDWKSGSRLDPGVDTTHSETN 280
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 511 IMKGCSTREILKETFCYSRIGIVTS 437
+M GC I FC SR G+V++
Sbjct: 208 LMDGCQVVPISSSKFCCSRFGLVST 232
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 675 HNKFPRISRITCAADFRKTQ--VLKRED 752
H FP S TC D +K + V KR D
Sbjct: 203 HELFPNASEFTCVRDLKKLEKKVKKRSD 230
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -2
Query: 671 QFETQYRLEVEKYRKRPKETYEHYVDFLNSTNQLYEPRSDSRPRDTFNNTYYPN 510
+FET+YR +++ Y K + EH NS Q +P ++ +F++ + N
Sbjct: 608 EFETRYRAQIQAYNKLQSQ-MEH---VQNSNEQHLQPGLLNKVSKSFDSVHRRN 657
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,209
Number of Sequences: 5004
Number of extensions: 74792
Number of successful extensions: 233
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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