Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G04
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70857-8|AAB09173.2|  256|Caenorhabditis elegans C.elegans homeo...    33   0.25 
U80455-7|AAB37885.1|  135|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z99171-1|CAB16308.1|  286|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical p...    29   5.5  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      28   9.5  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    28   9.5  
AC024201-12|AAL27266.1|  544|Caenorhabditis elegans Suppressor o...    28   9.5  

>U70857-8|AAB09173.2|  256|Caenorhabditis elegans C.elegans homeobox
           protein 34 protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 638 KYRKRPKETYEHYVDFLNSTNQLYEPRSDSRPRDTFNNTYYPNYEG-LLYTRNFEGNILL 462
           KYR R K  + + +     TN  ++ +S +  RD +    YP+ E      +  E +I+ 
Sbjct: 118 KYRIRKKNPFPNTIWDGEETNYCFKSKSRNVLRDAYKKCQYPSVEDKRRLAQQTELSIIQ 177

Query: 461 FTNWNRNK 438
            +NW +NK
Sbjct: 178 VSNWFKNK 185


>U80455-7|AAB37885.1|  135|Caenorhabditis elegans Hypothetical
           protein T01D1.1 protein.
          Length = 135

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = -2

Query: 266 YNFWFFSNNLEELLEGSKCTKSNQCTDYVMRRSASQTLLFSKRIAPKYVSDNVIRNVENI 87
           YNF FF NN E  L   + T     ++++ R++  ++    ++    Y   N I     +
Sbjct: 30  YNF-FFENNREVQLSELRTTFLEYASEHIARKTGKESGAKERQNQMDYRDRNPILQQRKV 88

Query: 86  WKVQGHY 66
           WK   +Y
Sbjct: 89  WKAATNY 95


>Z99171-1|CAB16308.1|  286|Caenorhabditis elegans Hypothetical
           protein F47G4.1 protein.
          Length = 286

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 239 LEELLEGSKCTK--SNQCTDYVMRRSASQTLLFSKRIAPKYVSDNVIRNVENIWKVQGHY 66
           LE  L  S C    +N C  + + + ++ T     +IA K+++DN    ++    +QGHY
Sbjct: 28  LEYCLGLSTCVAVYNNNCQMFEIGQISTATSTSETKIAFKFLADNATCPIQEPTSLQGHY 87


>Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 116 DNVIRNVENIWKVQGHY 66
           DNV++N+ N+ K+ GHY
Sbjct: 559 DNVLKNITNVRKLMGHY 575


>Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 116 DNVIRNVENIWKVQGHY 66
           DNV++N+ N+ K+ GHY
Sbjct: 559 DNVLKNITNVRKLMGHY 575


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 293 TSSKFNEEKYNFWFFSNNLEELLEGSKCTKSNQCT 189
           +SS  +++  N+W  SNN  +L++ +    + +CT
Sbjct: 498 SSSSSDKQHQNYWSISNNNTQLMQSAAQKSAAKCT 532


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 293 TSSKFNEEKYNFWFFSNNLEELLEGSKCTKSNQCT 189
           +SS  +++  N+W  SNN  +L++ +    + +CT
Sbjct: 498 SSSSSDKQHQNYWSISNNNTQLMQSAAQKSAAKCT 532


>AC024201-12|AAL27266.1|  544|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform b protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 293 TSSKFNEEKYNFWFFSNNLEELLEGSKCTKSNQCT 189
           +SS  +++  N+W  SNN  +L++ +    + +CT
Sbjct: 498 SSSSSDKQHQNYWSISNNNTQLMQSAAQKSAAKCT 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,519,808
Number of Sequences: 27780
Number of extensions: 401906
Number of successful extensions: 1276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)