Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G03
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    31   0.25 
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    29   0.58 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.3  
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    27   3.1  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    27   3.1  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.1  
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    25   9.4  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   9.4  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    25   9.4  

>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 196 YHSIKSHISNEQAPPPLRPTAHIPKARPTKKEEEIQS 306
           YH  + H   +QAPPP +P      A+  + +++I +
Sbjct: 8   YHDAEKHAPEQQAPPPQQPAHAAAPAQDDEPDDDIDA 44


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 699 RGRHIGHARVVL*VYGLEIKFHLMWLSA-GFLEVLDFLL*SSFYFPSWLSSLLCAKWCRP 523
           RG H  H+R +L     ++K + + +S+ G L++ DF L   F  PS +S  +  +W RP
Sbjct: 119 RGLHHIHSRFIL---HRDLKPNNLLISSDGVLKLADFGLSRDFGTPSHMSHQVITRWYRP 175


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 211  SHISNEQAPPPLRPTAHIPKARP 279
            S +SN+ APPP  P A +PKA P
Sbjct: 1874 SDLSNQAAPPPPPPMA-LPKAGP 1895


>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 794 VHEIGHSLGMSHSXVKSSVMYPYYQLPVDK 705
           +  I +     H  +  S++YPYY  P +K
Sbjct: 81  LESIDYEFSEFHIIINESIVYPYYTSPAEK 110


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 767 MSHSXVKSSVMYPYYQLPVDKLHV 696
           M H+  K S++Y  + LPV +LH+
Sbjct: 279 MFHTEFKCSILYDIWMLPVRQLHL 302


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 693 RHIGHARVVL*VYGLEIKFHLMW 625
           RH+G ++VV+ +Y   IK +L W
Sbjct: 102 RHVGSSQVVIKIYSPHIKDYLPW 124


>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 190 FVYHSIKSHISNEQAPPPLRPTAHIPKARPTK---KEEEIQSFTLL 318
           F+  S   ++     PPP +P    PK +P+K    E+ ++ + +L
Sbjct: 10  FITSSQWENVEASPKPPPRKPKIVQPKKKPSKHLSNEDALEKYEML 55


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
 Frame = +1

Query: 199 HSIKSHISNEQAPPPLRPTAHIPKARPTKKEEEIQSFTLLELRNR-----------SRLF 345
           H  + +  ++    P  P+ +IP+ RPT        F L   RNR           SR F
Sbjct: 305 HETEGYCPHKTGNRPGFPSLNIPRTRPTTAGIANTQFDLEPYRNRQAGSISSEGTDSRFF 364

Query: 346 *HENLHCCFKTVPVSPEIY 402
             EN     +T  V PE++
Sbjct: 365 DVENQVSVAQTPSVKPEMF 383


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 554 LLCYVLNGVDHT*PSISAAKKLCVSTFATTSRLL 453
           L+C ++   DH   +++A ++LC        RLL
Sbjct: 270 LVCILVGSHDHASAAVAAGRRLCAIGIKVVLRLL 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,783
Number of Sequences: 5004
Number of extensions: 53186
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)