Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G03
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 751 SNLLLCIHIISCPLTSYTWTTYWACKS 671
           S  L+ I+I  C L   +W ++W  +S
Sbjct: 242 SYYLIQIYIPCCMLVIVSWVSFWLDQS 268


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 751 SNLLLCIHIISCPLTSYTWTTYWACKS 671
           S  L+ I+I  C L   +W ++W  +S
Sbjct: 242 SYYLIQIYIPCCMLVIVSWVSFWLDQS 268


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 713 VDKLHVDDILGMQELYCEFMVW 648
           +DK+H+DD +G    +    +W
Sbjct: 329 LDKMHIDDPVGASATHGASGIW 350


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 572 IFLHGSLLCYVLNGVDHT 519
           + LHG ++C+V   +  T
Sbjct: 17  VLLHGQVICFVCKDITST 34



 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 517 SLVFLPRRNYVFRHSLQRAGFS 452
           SLV L ++ Y +RH+    G+S
Sbjct: 379 SLVSLDKKQYTWRHTSVLIGWS 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,442
Number of Sequences: 438
Number of extensions: 3652
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)