Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G01
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    31   0.13 
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.53 
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    27   2.2  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   6.6  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   8.7  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   8.7  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   8.7  

>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 275 TSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLHCITQTKDKNMKIKTG 421
           T+ T+F S    Y A + H SLL KL+     L+ +   K K ++I  G
Sbjct: 58  TNFTKF-SKFVYYLAITLHTSLLTKLIYCHADLYALQSIKYKRLRINNG 105


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 273 FFSDPGQQLIMGIIARDLDHSDAEASITAGGIGFSYANIKLKSPRGSGLN 124
           F+S PG++ I  I+   L  S       +GG G  Y  + +KS    G N
Sbjct: 27  FYSTPGERRIKDILTEKLSPSSLRVIDVSGGCGSMY-QVAIKSKAFQGKN 75


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -2

Query: 329 GKKKPNITPSHSRNESKKYFFRIRDNN*LWVL*PAT*TTRMLKQVLLQEASVSLMPT 159
           G  KP I    SR+ ++ YFF    +  LW   PA      LK+ +  E   S+ PT
Sbjct: 5   GLPKPWIVKI-SRSRNRPYFFNTETHESLWEP-PAATDMAALKKFIANELQESVTPT 59


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -1

Query: 372 KDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEV 274
           K+LIV TS  ++ L +E+  +NAI   KR++E+
Sbjct: 711 KELIVQTSSFQKELVEERERHNAI--SKRLQEI 741


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 343 IKTSTYYKIFTLYNTDQR*KYENQNGSELHFVVVFLKRLPQCVMCHVRR 489
           ++  TY  +F   +T  R     +  ++  +  VFL+ LPQC +  +R+
Sbjct: 64  LEDKTYSPLFKAGHTTWRIVLFPKGCNQTEYASVFLEYLPQCKVEAIRK 112


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 400 KYENQNGSELHFVVVFLK 453
           K+ N +GS++HF  +FLK
Sbjct: 387 KFSNIDGSDIHFRYLFLK 404


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -2

Query: 122 TNLKSTRKKVIL*TIVFNQEVFYHFMF 42
           +N+K ++K+++   + F+ EV+  F+F
Sbjct: 266 SNVKCSKKQILFSLLYFSSEVYLSFVF 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,444
Number of Sequences: 5004
Number of extensions: 51427
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)