Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_G01
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-1|AAA81141.1|  341|Caenorhabditis elegans Collagen protei...    27   8.1  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    27   8.1  
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass...    27   8.1  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   8.1  
AF040653-2|ABC48247.1|  343|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical...    27   8.1  

>U40060-1|AAA81141.1|  341|Caenorhabditis elegans Collagen protein
           172, isoform a protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 292 ETSQRSIFFGSGTTTDYGYYSPRP 221
           E SQR+   GSG++  YG Y P P
Sbjct: 100 ERSQRATGSGSGSSGGYGTYPPAP 123


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 381  IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 202
            ++  +LI G  + K   +Q +  ++  PL     +    +P QQ+I  I+ + L   DA+
Sbjct: 2468 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 2524

Query: 201  ASITAGGIG 175
              I A G G
Sbjct: 2525 GQIPAYGFG 2533


>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform a protein.
          Length = 1633

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 381  IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 202
            ++  +LI G  + K   +Q +  ++  PL     +    +P QQ+I  I+ + L   DA+
Sbjct: 1399 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 1455

Query: 201  ASITAGGIG 175
              I A G G
Sbjct: 1456 GQIPAYGFG 1464


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 381  IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 202
            ++  +LI G  + K   +Q +  ++  PL     +    +P QQ+I  I+ + L   DA+
Sbjct: 7314 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 7370

Query: 201  ASITAGGIG 175
              I A G G
Sbjct: 7371 GQIPAYGFG 7379


>AF040653-2|ABC48247.1|  343|Caenorhabditis elegans Hypothetical
           protein K05F6.11 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 264 DPGQQLIMGIIARDLDHSDAEASI 193
           D G+QL++G + RDL H D +  +
Sbjct: 318 DNGKQLLIGTVFRDLTHCDIDVPL 341


>AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical
           protein E01A2.8 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 264 DPGQQLIMGIIARDLDHSDAEASI 193
           D G+QL++G + RDL H D +  +
Sbjct: 474 DNGKQLLIGTVFRDLTHCDIDVPL 497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,578,080
Number of Sequences: 27780
Number of extensions: 290231
Number of successful extensions: 634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)