Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_F20
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 30 0.33
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 1.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 27 2.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.1
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 5.4
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.4
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 5.4
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 5.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 5.4
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 7.2
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 25 7.2
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 9.5
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 9.5
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 387 STSTPVPASGPIPPEDKDVTNNKKKQRTASSAPK 286
S+STP PAS PP ++++K R+ +P+
Sbjct: 619 SSSTPTPASVLAPPSSASLSSSKDANRSVPESPR 652
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.3 bits (60), Expect = 1.0
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Frame = -2
Query: 642 SMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXAIGLNSSPP-SPTHNVPAAMDSLPIP 466
+ME PQ + V ST S R N++ P T P S P P
Sbjct: 834 NMEEPQHQDSSVVDVSTSASQRGSPVLSDLSKLTGSARNTAEPVENTSAEPIENTSAPTP 893
Query: 465 TPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIPPEDKD 334
+ T A + STP P P+PP +D
Sbjct: 894 FEIANKQQATEPISAPF------ATETISTPAPVKPPVPPSRRD 931
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.3
Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
Frame = -2
Query: 633 SPQPSSARTVLCSTLL--SGRXXXXXXXXXXXXAIGLNSSPPSPTHNVPAAMDSLPIP-T 463
SP P+++ + ST + +G + S+PP P S P+P T
Sbjct: 276 SPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPST 335
Query: 462 PLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIPPEDKDV-TNNKKKQRTASSAPK 286
T+ST+ P TST ++ P P T++ T++S
Sbjct: 336 STSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTT 395
Query: 285 SSWLMP 268
S+ + P
Sbjct: 396 STSIPP 401
Score = 27.5 bits (58), Expect = 1.8
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 4/124 (3%)
Frame = -2
Query: 519 PPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASG---PIP 349
PP+ T + + LP + C TS T+ T T P S PIP
Sbjct: 151 PPTSTSSTDTNSNPLPTTSTSCTTS--TSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIP 208
Query: 348 PEDKDVTN-NKKKQRTASSAPKSSWLMPKDRXXXXXXXXXXXTANVSTYA*TVSSPVTSA 172
P T+ N T S++ +S +P ST + ++ P TS
Sbjct: 209 PTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST 268
Query: 171 AKSE 160
+ ++
Sbjct: 269 SSTD 272
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/85 (24%), Positives = 31/85 (36%)
Frame = -2
Query: 522 SPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIPPE 343
+PP P VP+ +PIPT +++ P+ S P P+ P P
Sbjct: 1031 APPIP---VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087
Query: 342 DKDVTNNKKKQRTASSAPKSSWLMP 268
+ K A PK S +P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVP 1112
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 27.1 bits (57), Expect = 2.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 490 GGDIVSWAWGAGVQSY 537
G I+SW+WG G +S+
Sbjct: 140 GSSILSWSWGLGFESF 155
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Frame = -1
Query: 229 NDCQRFYV--CLNGVEPRDLGCQVGEVYNEESQK----CDAPENVR---GCEDWYKDSEE 77
N C++ + C+N L C GE+YN+ES K C E V C +K++EE
Sbjct: 209 NQCEKLVINACINPTTAT-LDCVNGELYNDESAKELFRCIIKECVDIFFKCIPLFKNNEE 267
Query: 76 A 74
A
Sbjct: 268 A 268
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Frame = -2
Query: 522 SPPSPTHNVPAAMDSLPIPT--PLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIP 349
+PP+P +P A+ ++P+P+ P A ++ P S+ VP+ P
Sbjct: 1477 APPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPA 1536
Query: 348 PEDKDVTNNKKKQRTASSAPKSSWLMPKD 262
P+ S +SS P++
Sbjct: 1537 PQHPSAAALSSAPADNSMPHRSSPYAPQE 1565
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 272 INQLLFGALEAVLCFFLLFVTSLSSG 349
I LE +LCFFL++ T+ S G
Sbjct: 47 IRDSFLSQLENILCFFLVYRTTYSFG 72
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 77 FLRVL-VPVLASANVLRRIAFLALFVINLSDL 169
FL+++ P+L++ VLR I F A+ +N L
Sbjct: 583 FLKIISFPLLSNDKVLREIEFFAIHEVNFRSL 614
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 354 IPPEDKDVTNNKKKQRTASSAPKSSWLMPKD 262
+PPE +++ + +KQ+ K SWL +D
Sbjct: 162 LPPEHRNIWFDMEKQKKEELKNKHSWLYNED 192
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 466 DPSVCNIFYNCIEGEATEVKC 404
+P CN+ Y CIE + C
Sbjct: 176 EPVKCNLCYECIESDELRANC 196
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.4
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = -2
Query: 528 NSSPPSPTHNVP-AAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPI 352
+SS P + P ++ S P +TSS A STS+ P+S I
Sbjct: 472 SSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSII 531
Query: 351 PPEDKDVTNNKKKQRTASSAPKSS 280
V ++ T+SS+ SS
Sbjct: 532 SSPMTSVLSSSSSIPTSSSSDFSS 555
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 81 SESLYQSSHPRTFSGASHFWLSSL*TSPTWQPRSR 185
++ L +S HP + SG S+ +++S WQ R R
Sbjct: 728 NDKLIKSIHPGSLSGISNSFVNSKHPIEQWQSRLR 762
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 269 GINQLLFGALEAVLCFFLLFVTSLSSGGIGPDAG 370
GI +GA +L F F S+ G PDAG
Sbjct: 480 GIYGACYGAFIIILVFITEFYVSIFPIGASPDAG 513
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 390 TSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSS 280
TSTSTP A+ P P V K + +++ A +S
Sbjct: 77 TSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTS 113
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 387 STSTPVPAS-GPIPPEDKDVTNNKKKQRTASSAPKS 283
S+STP +S PPED D K+ R A++ K+
Sbjct: 1414 SSSTPKASSTNAEPPEDSDSPIRKRPTRRAAATVKT 1449
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.5
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Frame = -2
Query: 642 SMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXAIGLNSSPPSPTHNVPAAMDSLP--- 472
S S QPS + T ST S ++ +SS PS + + SL
Sbjct: 181 STSSSQPSVSSTS-SSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSS 239
Query: 471 IPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIPPEDKDVTNNKKKQRTASSA 292
IP+ ++SST++ + +S+S+ + +S ++ ++SS+
Sbjct: 240 IPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSS 299
Query: 291 PKSS 280
P S+
Sbjct: 300 PTST 303
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 9.5
Identities = 22/77 (28%), Positives = 29/77 (37%)
Frame = -2
Query: 519 PPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIPPED 340
PPSP P + PIP+ L + A P+ S P+P P PP
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAA---PVKSPPSAPSLPSAVPPMPPKVPPPPLS 207
Query: 339 KDVTNNKKKQRTASSAP 289
+ N R +S AP
Sbjct: 208 QAPVAN-TSSRPSSFAP 223
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 101 LASANVLRRIAFLALFVINLSDLAA-EVTGLDTVQAYVETLA 223
L + +LR + + LF + +S LA E T +QAY+E LA
Sbjct: 432 LVTPPLLRILTHIILF-LKISGLAVDEYTSDSIIQAYIELLA 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,252
Number of Sequences: 5004
Number of extensions: 57850
Number of successful extensions: 230
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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