Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F19
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    31   0.23 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    28   1.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.0  

>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 565 YLNHLKTPQFISYPVPMLAPFWKIF*KL 482
           YL HLK+P+  +Y V  L  FW+   KL
Sbjct: 226 YLEHLKSPELSTYEVSELKKFWEYADKL 253


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 34  KRTHRNGCSFSFLFPLIRR*FKVYKYFKAFL 126
           KR+++N C  + L PL++  + +Y++  + L
Sbjct: 175 KRSNKNECRIAALVPLVQESYGIYRFLTSML 205


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 610 LTTLVIKYIKFPYSEYLNHLKTPQFISYP 524
           L TL +  I F Y ++L+ +K P F   P
Sbjct: 820 LPTLPVAEIPFTYQQFLDAVKPPPFFDAP 848


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,755
Number of Sequences: 5004
Number of extensions: 51809
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)