Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_F14
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 31 1.2
09_04_0559 + 18516732-18516746,18516893-18517330 31 1.2
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126... 30 1.6
11_01_0612 + 4902197-4902929,4903443-4904071 29 3.8
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.8
12_01_0419 - 3316866-3318172,3318249-3318360 29 5.0
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 29 5.0
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 29 5.0
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 28 8.7
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 683 KPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDEDK 504
K SA +EGS+ ++P + K+D PN+ I P+ + LA + ++DK
Sbjct: 464 KISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTIVEPQDIERGGLAVDCGEDDK 523
>09_04_0559 + 18516732-18516746,18516893-18517330
Length = 150
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = -1
Query: 704 AEISKEEKPSATDAEGSADSAAIIPNMVKKIDL-APNVESDAAAVPEIKTPEAADAPKLA 528
AE KE +P + E + P + A E A E+K EAA AP
Sbjct: 71 AEEVKEAEPEPAEPEAEPAKEEVAPEPAAAAEAEAKEAEPAAQVAEEVKEEEAAPAPAAE 130
Query: 527 DNPVDEDKP 501
+ V+E P
Sbjct: 131 EVKVEEAAP 139
>01_07_0238 +
42209407-42209964,42210039-42210561,42212577-42212665,
42212981-42213191,42213265-42213446,42213573-42213812,
42214691-42214878,42215230-42215323,42215407-42215463,
42215552-42215686,42216460-42216525,42216745-42216858,
42217849-42218010,42218093-42218221,42218323-42218424,
42219428-42219504,42219600-42219957
Length = 1094
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 677 SATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADA 540
SA A GSAD AA + L PN+ S +++P E+A A
Sbjct: 83 SALQAAGSADPAAASALASLLVILLPNIPSSPSSLPPASASESASA 128
>11_01_0612 + 4902197-4902929,4903443-4904071
Length = 453
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -1
Query: 647 SAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLAD 525
+AA PN V ID+ AAA P + PEAA P L D
Sbjct: 25 AAAAAPNQVA-IDVVVVHHHGAAAAPGQQAPEAAPVPHLLD 64
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = -1
Query: 707 VAEISKEEKPSATDAEGSADSAAIIPN----MVKKIDLAPNVESDAAAVPEIKTPEAA 546
V + PSA A A + ++ PN V LAP + AAA P + P AA
Sbjct: 609 VVTVGAPPPPSAAPAPAPASAPSLEPNDIIAPVVSSTLAPGASAAAAAAPAVAPPAAA 666
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = -1
Query: 713 ATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPK 534
ATV E + + P+A + A P + P E AA PE + P+ P
Sbjct: 306 ATVDEPEQPKPPAAVEPPVQEPPAEETPTATEPEPEPPAAEEPPAAEPE-QEPQPETPPV 364
Query: 533 LADNPVDEDKP 501
++ P +E P
Sbjct: 365 ESETPAEEQAP 375
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = -1
Query: 662 EGSADSAAIIPNMVKKIDL-------APNVESDAAAVPEIKTPEAADAPKLADNPVD--E 510
+GSA S I N + ++L AP + S AVP P A D P LAD P + E
Sbjct: 82 DGSAASFGISINHTRALELPGVCKVQAPPI-SQCTAVPT--PPPAPDTPTLADEPAETNE 138
Query: 509 DKPA 498
D+P+
Sbjct: 139 DEPS 142
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = -1
Query: 701 EISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADN 522
E+ K + AT D+ + K++ + S AAA P +P A + PK +
Sbjct: 159 ELKKLREQLATAEAAKKDAQVALEEAKKRVGTKGSPASAAAASPRSPSPVAVETPKKTEQ 218
Query: 521 PVDEDKP 501
+ +P
Sbjct: 219 QLKVTEP 225
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -1
Query: 713 ATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEA-ADAP 537
A A+ S E P A++ + S +IP LAP S AA+ E+ E+ + AP
Sbjct: 59 AAQAQASSEGSPPASELSPGSLSPVMIPPPRHADHLAPGSPSPAASPSELGDDESWSRAP 118
Query: 536 KLADNPVDEDKPADI 492
A+ + + A+I
Sbjct: 119 SAAELESNNNDLAEI 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,266
Number of Sequences: 37544
Number of extensions: 221159
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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