Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F13
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   2.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.2  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 415 VNKLETGYRLVTPDVLEKEKQLYDVIIDC 329
           V KLE+G R +TPD  +  + ++++I  C
Sbjct: 73  VEKLESGTRELTPD--DFTEDVHEIIEQC 99


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 415 VNKLETGYRLVTPDVLEKEKQLYDVIIDC 329
           V KLE+G R +TPD  +  + ++++I  C
Sbjct: 73  VEKLESGTRELTPD--DFTEDVHEIIEQC 99


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 808  VFRNGQKVVVDPNRA 764
            VF NG+K+VV  N+A
Sbjct: 1529 VFVNGEKIVVSRNKA 1543


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 325 GVGKVMEISFNYLRHGGKYVL 263
           G   V+++SFN  RH G +++
Sbjct: 229 GEFSVLQVSFNLQRHTGYFLI 249


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 205 KELTIIGVKINPFSFPNALGWLKAMGNRYVNY-EKLGVKTYALS 77
           KE  II    N + + N   +     N Y NY +KL  K Y ++
Sbjct: 310 KEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIIN 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,242
Number of Sequences: 438
Number of extensions: 4748
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)