Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F12
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    28   0.59 
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    28   0.78 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   4.2  
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    24   9.6  

>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 28.3 bits (60), Expect = 0.59
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 314 FESFYQLFFTILFYYIYTINTSF 382
           + SFYQ ++T+LF+YI     SF
Sbjct: 147 YSSFYQTWYTLLFFYIPPCLLSF 169


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 27.9 bits (59), Expect = 0.78
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 314 FESFYQLFFTILFYYIYTINTSFHHVNIILN*ITHVITC 430
           F SF    F  +F+ I+ +N + + +NII+  IT ++TC
Sbjct: 95  FLSFLSAIF--VFFSIFLVNQAVNIINIIVVFITTLLTC 131


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 172 LTDFFLELSFFHYTLIDIKFSLIFLRNLLKLSIAFN*HLLSK 297
           LT+ FL+LSF    L  ++ ++IFL     +++A N  +L++
Sbjct: 377 LTEDFLDLSFSLSRLSTLQAAIIFLTGRPWINVAGNWSILTR 418


>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 287 KCQLKAMESFNRFLKNIKLNFISIR 213
           K  + AME    FL+N+K +++S++
Sbjct: 137 KAYVDAMEQQTAFLRNVKDDYVSLQ 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,888
Number of Sequences: 5004
Number of extensions: 18230
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)