Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F11
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    31   0.19 
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    27   2.3  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.3  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   9.3  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   9.3  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   9.3  

>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 545 NAINY*THLRRHV-VSYLCAKECILSYLLSVTSKHYLHKIKTL 670
           NA NY    +RH  VS L +K+C L Y  S T+K YL K+K+L
Sbjct: 87  NARNY---FKRHGGVSLLNSKDCRLKYS-SKTAKQYLEKLKSL 125


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = -2

Query: 537 YFRLMVCIVVYYVGIIEKYNLSVLIVYVNIF*SVT--TLYSMFKYLYMKDSLVGTRAMKL 364
           Y +L+VC  +Y++GI+E+ +    IV V +F S T    ++    L ++ S+  T A  +
Sbjct: 112 YLKLIVCSPLYFMGILEETD----IVNVRLFESETFAKSFNSITTLSVRFSVKNTPAQAI 167

Query: 363 FELF 352
            +++
Sbjct: 168 VKIY 171


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 201 INESPNEMVRFKGLFGRIRDATFSEIVFFHSCALLHI 311
           +N  PNE+ + + LFG+I   + S+I       LL I
Sbjct: 1   MNSVPNELTKSQELFGQISKISHSKISISELITLLDI 37


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 569 LRRHVVSYLCAKECILSYLLSVTSKHYLHKIKTLFGI 679
           LR  ++ YLC +      ++   SK + HK++ +FG+
Sbjct: 490 LRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGL 526


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -3

Query: 686 VYVCRIMFLFYADNVSKSQIINMTECILWHTDKIQHAYVNEFNNLSHLISTSG 528
           +YVC     F   + +  Q+I++T  ++W +  +    V E N   HL    G
Sbjct: 521 IYVCSKKTWFLYKDANMEQLISVTCPMIWCSQFLLAGVVCESNFELHLYKAKG 573


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 198 HPISLNSIPFHDIVN-FISCHSRLLS*IGL*LYDIKY 91
           HP +L S PF D +  F++ HS     +   LY + +
Sbjct: 310 HPFTLASAPFDDFIELFVAVHSGFTERLANRLYSMPH 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,278
Number of Sequences: 5004
Number of extensions: 65828
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)