Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F11
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022972-13|AAC48241.2|  527|Caenorhabditis elegans Udp-glucuron...    30   2.1  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    28   8.7  

>AF022972-13|AAC48241.2|  527|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein41 protein.
          Length = 527

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 253 ILPKSPLNLTISFGDSFISSYIP*FH 176
           IL K P N+ ISFG  F S Y+P F+
Sbjct: 292 ILKKRPHNVLISFGSMFKSIYMPDFY 317


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 207 ESPNEMVRFKGLFGRIR 257
           ESP E + F+GLFGR++
Sbjct: 66  ESPTERLAFEGLFGRVK 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,081,646
Number of Sequences: 27780
Number of extensions: 356365
Number of successful extensions: 815
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)