Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F08
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    31   0.17 
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.1  
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    26   4.9  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   4.9  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   8.6  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.6  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.6  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 378 TPFTQTSDTTPIVPKKGRGRPRIKP 304
           +P T+  D  P+ PK+GRGRPR+ P
Sbjct: 136 SPSTKLDD--PLKPKRGRGRPRLHP 158



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -2

Query: 339 PKKGRGRPRI-KPSDTKLD 286
           PK+GRGRPR+ +PS   LD
Sbjct: 338 PKRGRGRPRLERPSGLPLD 356



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -2

Query: 360 SDTTPIVPKKGRGRPR-IKPSD 298
           ++ + + PK+GRGRPR IKP +
Sbjct: 193 ANLSELKPKRGRGRPRKIKPEE 214


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 510 TTSKFMPKRDGPYRVKRVITPTTFILANLTDDDTVIGKYHSSDLTPFTQTS 358
           T    M ++D PY  +R      F+ A+L +   ++    S  L  FTQT+
Sbjct: 362 TAKNAMSRKDNPYNDERAGIYEIFLKAHLMNMPRLLRDIDSRHLLEFTQTA 412


>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 285 GPTWYLTV*YAAYPYLSLEQWVWY 356
           G  WYL+   A  P+  L QW+ Y
Sbjct: 250 GDAWYLSTIDAIQPFHKLTQWLTY 273


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 468 RDMGHLVLA*ICW*FLSRHCSVRGF*PRPNHFL 566
           RD GH  +A ICW   +R  S  G+     H L
Sbjct: 609 RDCGHCKMAEICWNLANRVYSKSGWESLSEHML 641


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 278  RPGSNLVSDGLIRGLPLPFFGTMGVVSDV*VKGVRSELWYFPMTVSSS 421
            RP +NLVS  ++  L +     + ++  + ++ VR E WY P   +SS
Sbjct: 1128 RPTANLVSKRILSPL-IGQIVLICIIQYITLRIVRREPWYIPPPANSS 1174


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 681 PYLRSFIRTLQDIRDRVEKKQDQRKEIGDTARRPMPP--YKENDLVLVKTHALSNASK 514
           P L + IRTLQD  + VE+   ++      A +P+    +  N       HAL  A K
Sbjct: 202 PQLDAEIRTLQDTFEEVERTLTKQVSDAKIADKPLKDSMFNSNSEKEKIMHALEKAEK 259


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 639 DRVEKKQDQRKEIGDTARRPMPP 571
           D+VE K+ ++KE+ +T     PP
Sbjct: 243 DQVESKEVKKKEVSETTEPTAPP 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,314
Number of Sequences: 5004
Number of extensions: 59095
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)