Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F08
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.43 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   7.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 460 TFNAIWAISFWHEFAGSSFRGIAQ 531
           TFN++W  S + E A  SF G+ +
Sbjct: 125 TFNSVWGASRFLELAPDSFLGLRE 148


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -1

Query: 307 TVRYQVGPGTCYQLGGGAYNATGHFRTHP*FPSA 206
           T+ Y  G  TC Q+        G+   H   PSA
Sbjct: 192 TIEYSTGNFTCIQIVFNLRRRLGYHLFHTYIPSA 225


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 299 SDGLIRGLPLPFFGT 343
           S G++   P+PFFGT
Sbjct: 31  SRGVVGPKPVPFFGT 45


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 507  TSKFMPKRDGPYRVKRVITPTTFILANLTDDD 412
            TS  +PK +GP+R+      T   +  L D +
Sbjct: 1068 TSLALPKNEGPFRLNVETAKTNEEMWELIDTE 1099


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
 Frame = -2

Query: 441 FILANLTDDDTVIGKYHSSDLT---------PFTQTSDTTPIVPKKGRGRPR 313
           FI+ N  +DD  +GK +S+  T          + Q +D    + + GRG+ R
Sbjct: 33  FIIQNNNNDDWSVGKKNSNSGTINESEFNDENYWQCNDKKTDIEETGRGKGR 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,204
Number of Sequences: 438
Number of extensions: 4647
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)